chr19 : 4,329,263 – 4,329,852
589 bp 101 TFs 2 linked genes
This 589 bp open chromatin element is linked to STAP2 and ENSG00000269425 and is bound by 101 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
STAP2 9.0 kb Proximal Proximity
ENSG00000269425 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:4,324,263 – 4,334,852
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 145 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 201 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 285 bp overlap
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 216 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 54 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF687QUE 245 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD2 2 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 356 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 317 bp overlap
BRD3 3 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 467 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 356 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 407 bp overlap
BRD4 16 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 257 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 307 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 204 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 317 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 322 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 258 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 342 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 257 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 319 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 309 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 258 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 334 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 303 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 496 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 79 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 239 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 224 bp overlap
ChIP K562 ENCFF199GSZ 392 bp overlap
CHD1 2 datasets
ChIP K-562 ENCSR000AQD.CHD1.K-562 273 bp overlap
ChIP K562 ENCFF118VJV 100 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 99 bp overlap
CTCF 1 dataset
ChIP erythroid GSE67783.CTCF.erythroid 138 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 151 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 213 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 216 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 195 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF015GDS 180 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 207 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 301 bp overlap
HDAC2 2 datasets
ChIP K-562 GSE140325.HDAC2.K-562 124 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 234 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 294 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 217 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 91 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 359 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR000EGT.IRF1.K-562 261 bp overlap
KDM1A 5 datasets
ChIP H1 ENCFF696SGD 187 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 174 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 248 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 50 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 262 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KDM5B 1 dataset
ChIP K-562 ENCSR000AQA.KDM5B.K-562 180 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 364 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 237 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 225 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 272 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 160 bp overlap
MAX 3 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 129 bp overlap
ChIP K562 ENCFF524IJO 397 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 224 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 151 bp overlap
MIER1 1 dataset
ChIP K562 ENCFF584AYC 100 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 194 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR512NLO.MNT.K-562 107 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 208 bp overlap
MYC 2 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 190 bp overlap
ChIP Kelly GSE138295.MYC.Kelly 249 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 326 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 133 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 216 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 363 bp overlap
NELFA 2 datasets
ChIP K-562_HS GSE112379.NELFA.K-562_HS 236 bp overlap
ChIP K-562_NHS GSE112379.NELFA.K-562_NHS 264 bp overlap
NELFE 3 datasets
ChIP HCT-116_KAP1-KO GSE132705.NELFE.HCT-116_KAP1-KO 236 bp overlap
ChIP K-562_HS GSE112379.NELFE.K-562_HS 542 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 316 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 119 bp overlap
NFRKB 1 dataset
ChIP K562 ENCFF057YFW 182 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 388 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF447SRJ 71 bp overlap
PHF8 1 dataset
ChIP K-562 ENCSR000AQH.PHF8.K-562 222 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 72 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 342 bp overlap
POLR2A 3 datasets
ChIP K562 ENCFF262YXJ 268 bp overlap
ChIP K562 ENCFF757TUO 437 bp overlap
ChIP Raji ENCFF613VGX 495 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 402 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 464 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 185 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 437 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 430 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 88 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 337 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 115 bp overlap
SIN3A 1 dataset
ChIP K-562 ENCSR920BLG.SIN3A.K-562 132 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 208 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 175 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 233 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 314 bp overlap
ChIP K562 ENCFF506JCB 151 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 230 bp overlap
ChIP K562 ENCFF936KHY 167 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 289 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 119 bp overlap
SP1 6 datasets
ChIP GM12878 ENCSR000BHK.SP1.GM12878 131 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 225 bp overlap
ChIP K-562 ENCSR991ELG.SP1.K-562 379 bp overlap
ChIP K562 ENCFF907BMO 465 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 345 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 386 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 437 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 270 bp overlap
SP3 3 datasets
ChIP HEK293 ENCFF087XLA 524 bp overlap
ChIP HEK293 ENCFF087XLA 421 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 325 bp overlap
SP4 3 datasets
ChIP HEK293 GSE76494.SP4.HEK293 252 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 188 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 134 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 201 bp overlap
STAT3 1 dataset
ChIP Th1_IL-6_Mut3 GSE130810.STAT3.Th1_IL-6_Mut3 155 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 291 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 151 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 589 bp overlap
TAF1 3 datasets
ChIP K-562 ENCSR000BKS.TAF1.K-562 229 bp overlap
ChIP K562 ENCFF491WAE 369 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 133 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 261 bp overlap
TBP 4 datasets
ChIP K-562 GSE55306.TBP.K-562 240 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 199 bp overlap
ChIP K562 ENCFF901UYM 381 bp overlap
ChIP hESC GSE122298.TBP.hESC 141 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 111 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 155 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 279 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 234 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 276 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 495 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 127 bp overlap
ZBED1 1 dataset
ChIP K-562 ENCSR286PCG.ZBED1.K-562 130 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 244 bp overlap
ChIP K562 ENCFF521DSV 83 bp overlap
ZBTB6 2 datasets
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 262 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 247 bp overlap
ZBTB7A 3 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 357 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 342 bp overlap
ChIP K562 ENCFF579ZGM 401 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 166 bp overlap
ZFX 4 datasets
ChIP HCT116 ENCFF324IZY 272 bp overlap
ChIP HEK293T ENCFF402JZW 121 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 328 bp overlap
ChIP K562 ENCFF536AJO 77 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 165 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 195 bp overlap
ChIP K562 ENCFF361LXT 237 bp overlap
ZNF12 1 dataset
ChIP K-562 ENCSR041YBR.ZNF12.K-562 176 bp overlap
ZNF121 2 datasets
ChIP K562 ENCFF314GND 266 bp overlap
ChIP WTC11 ENCFF291API 266 bp overlap
ZNF143 1 dataset
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 366 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 144 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 135 bp overlap
ZNF407 1 dataset
ChIP K562 ENCFF568QZW 170 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 151 bp overlap
ZNF639 2 datasets
ChIP K562 ENCFF271FQR 52 bp overlap
ChIP K562 ENCFF271FQR 252 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 225 bp overlap
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