chr19 : 18,248,373 – 18,248,701
328 bp 72 TFs 2 linked genes
This 328 bp open chromatin element is linked to CIST1 and PDE4C and is bound by 72 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CIST1 6.7 kb Proximal Proximity
PDE4C 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:18,243,373 – 18,253,701
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 299 bp overlap
ChIP K562 ENCFF938UXQ 310 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 69 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 328 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 321 bp overlap
ChIP K562 ENCFF963TXY 191 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 328 bp overlap
ChIP K562 ENCFF673OEZ 320 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 99 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 199 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 316 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 252 bp overlap
EGR1 6 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 328 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 284 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 227 bp overlap
ChIP K562 ENCFF006PJY 65 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF895KGN 311 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 328 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 258 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 174 bp overlap
ChIP K562 ENCFF226VMS 287 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 70 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 58 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 124 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 163 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 202 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 59 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 275 bp overlap
GATA1 3 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 196 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 286 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 162 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 166 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 130 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 226 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 251 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 238 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
GTF2I 2 datasets
ChIP K562 ENCFF539BYI 222 bp overlap
ChIP WTC11 ENCFF255XXZ 177 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 328 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 328 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 155 bp overlap
KDM1A 8 datasets
ChIP K-562 GSE117944.KDM1A.K-562 247 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 185 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 180 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 191 bp overlap
ChIP K562 ENCFF128TYE 221 bp overlap
ChIP K562 ENCFF133OLU 219 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 128 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 190 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 178 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 321 bp overlap
MAZ 2 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 95 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 279 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 250 bp overlap
ChIP K562 ENCFF320GSD 160 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 173 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 247 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 328 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 193 bp overlap
ChIP K562 ENCFF788MPU 328 bp overlap
ChIP K562 ENCFF866HRM 166 bp overlap
NFIC 3 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 328 bp overlap
ChIP K562 ENCFF167YID 73 bp overlap
ChIP K562 ENCFF167YID 328 bp overlap
NFXL1 1 dataset
ChIP K-562 ENCSR085DDI.NFXL1.K-562 105 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 58 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 94 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 62 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 165 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 59 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 174 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 227 bp overlap
ChIP K562 ENCFF286KMN 328 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 256 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 204 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 146 bp overlap
POLR2A 1 dataset
ChIP upper lobe of left lung ENCFF199JUI 59 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 328 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 328 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 142 bp overlap
ChIP K562 ENCFF248CGR 179 bp overlap
ChIP K562 ENCFF957ORK 179 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 225 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 235 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 107 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 280 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 197 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 136 bp overlap
ChIP K562 ENCFF936KHY 179 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 328 bp overlap
TAL1 11 datasets
ChIP K-562 GSE107726.TAL1.K-562 328 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 282 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 257 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 201 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 182 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 242 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 220 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 207 bp overlap
ChIP K562 ENCFF620GMX 195 bp overlap
ChIP K562 ENCFF661CCK 96 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 256 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 57 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 328 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 227 bp overlap
ChIP K562 ENCFF931DJY 204 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 210 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 315 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 328 bp overlap
ChIP K562 ENCFF053XDV 277 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 132 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 260 bp overlap
ZFP36 3 datasets
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 76 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 204 bp overlap
ChIP K562 ENCFF255RZG 156 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 173 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 187 bp overlap
ChIP K562 ENCFF361LXT 180 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 293 bp overlap
ChIP K562 ENCFF352SDL 328 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 156 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCFF184XEW 161 bp overlap
ZNF768 3 datasets
ChIP HEK293 ENCFF579QSI 163 bp overlap
ChIP HEK293 ENCSR070HWF.ZNF768.HEK293 114 bp overlap
ChIP HepG2 ENCFF388QCK 166 bp overlap