chr2 : 11,540,555 – 11,540,748
193 bp 108 TFs 2 linked genes
This 193 bp open chromatin element is linked to MIR4429 and GREB1 and is bound by 108 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MIR4429 at TSS At TSS Proximity
GREB1 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:11,535,555 – 11,545,748
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
None 1 dataset
ChIP HepG2 ENCFF731CFD 193 bp overlap
AR 7 datasets
ChIP LNCaP GSE110655.AR.LNCaP 193 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 97 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 193 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 193 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 193 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 127 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 136 bp overlap
ARID2 1 dataset
ChIP HepG2 ENCFF317ZHO 80 bp overlap
BRD3 1 dataset
ChIP MCF-7_E2 GSE109571.BRD3.MCF-7_E2 127 bp overlap
BRD4 2 datasets
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 193 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 193 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 58 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCFF341ZEM 110 bp overlap
CTCF 1 dataset
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 193 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 193 bp overlap
DRAP1 2 datasets
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 165 bp overlap
ChIP HepG2 ENCFF296JHR 193 bp overlap
E2F4 1 dataset
ChIP HepG2 ENCFF311TOD 193 bp overlap
EED 1 dataset
ChIP HepG2 ENCFF347CCA 90 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 193 bp overlap
ChIP MCF-7_E2 GSE115607.ESR1.MCF-7_E2 155 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 130 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 159 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 191 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 75 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 126 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 193 bp overlap
EZH2 2 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 193 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 100 bp overlap
FOXA1 2 datasets
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 82 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 93 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 57 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 120 bp overlap
GMEB1 1 dataset
ChIP Hep-G2 ENCSR780OXL.GMEB1.Hep-G2 192 bp overlap
HMG20B 1 dataset
ChIP HepG2 ENCFF756WYV 193 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 193 bp overlap
HOXA10 2 datasets
ChIP HepG2 ENCFF422LBU 193 bp overlap
ChIP HepG2 ENCFF422LBU 90 bp overlap
HOXB13 3 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 134 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 59 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 76 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 137 bp overlap
JUN 1 dataset
ChIP HepG2 ENCFF910FFW 81 bp overlap
KAT7 2 datasets
ChIP HepG2 ENCFF613PTN 193 bp overlap
ChIP HepG2 ENCFF613PTN 123 bp overlap
KAT8 1 dataset
ChIP HepG2 ENCFF890JFC 109 bp overlap
KDM5A 1 dataset
ChIP HepG2 ENCFF105YGO 193 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 105 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 193 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF479OHI 117 bp overlap
MBD4 1 dataset
ChIP HepG2 ENCFF785HSD 193 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 84 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 103 bp overlap
MEIS1 1 dataset
ChIP HepG2 ENCFF706DID 169 bp overlap
MSX2 2 datasets
ChIP MCF-7 ENCFF179YRV 137 bp overlap
ChIP MCF-7 ENCFF179YRV 99 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 193 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 143 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 156 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 107 bp overlap
NAIF1 1 dataset
ChIP HepG2 ENCFF291NIS 113 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 193 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 193 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 150 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 193 bp overlap
ChIP hESC GSE18292.NANOG.hESC 64 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 193 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 129 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 177 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 118 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 104 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 151 bp overlap
NR3C1 2 datasets
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 193 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 120 bp overlap
NR5A1 1 dataset
ChIP HepG2 ENCFF970YZO 193 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 84 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 137 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 145 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 167 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 193 bp overlap
POLR2A 5 datasets
ChIP HepG2 ENCFF252NAR 193 bp overlap
ChIP HepG2 ENCFF350RIU 50 bp overlap
ChIP HepG2 ENCFF736SLT 117 bp overlap
ChIP MCF-7 ENCFF164XWP 193 bp overlap
ChIP MCF-7 ENCFF309IKZ 193 bp overlap
POU5F1 6 datasets
ChIP H1 ENCFF698ZAP 124 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 193 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 146 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 86 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 193 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 193 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 156 bp overlap
PRMT3 1 dataset
ChIP HepG2 ENCFF257VCG 178 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 140 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 193 bp overlap
ChIP HepG2 ENCFF939HTZ 193 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 193 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 184 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 101 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 193 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 185 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 193 bp overlap
SIN3A 1 dataset
ChIP HepG2 ENCFF394WQQ 160 bp overlap
SMAD7 1 dataset
ChIP HepG2 ENCFF850FXR 149 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 193 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 97 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 179 bp overlap
SMARCB1 2 datasets
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 61 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 120 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 84 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 193 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 139 bp overlap
SMYD3 2 datasets
ChIP HepG2 ENCFF612TNJ 193 bp overlap
ChIP HepG2 ENCFF612TNJ 193 bp overlap
SNAPC2 1 dataset
ChIP HepG2 ENCFF237IWR 193 bp overlap
SNAPC5 1 dataset
ChIP HepG2 ENCFF853IKB 182 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 133 bp overlap
TAF1 2 datasets
ChIP HepG2 ENCFF946IUP 190 bp overlap
ChIP MCF-7 ENCFF091WNP 118 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 193 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 104 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 81 bp overlap
TGIF2 1 dataset
ChIP HepG2 ENCFF421ZJN 132 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 72 bp overlap
ZBTB37 1 dataset
ChIP HepG2 ENCFF717TTW 79 bp overlap
ZC3H4 1 dataset
ChIP HepG2 ENCFF603QUY 193 bp overlap
ZC3H8 1 dataset
ChIP HepG2 ENCFF862NOM 178 bp overlap
ZFP1 1 dataset
ChIP HepG2 ENCFF148GGU 193 bp overlap
ZFP36L1 1 dataset
ChIP HepG2 ENCFF375BAZ 193 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 69 bp overlap
ZFX 4 datasets
ChIP MCF-7 ENCFF009NAJ 193 bp overlap
ChIP MCF-7 ENCFF009NAJ 193 bp overlap
ChIP MCF-7 ENCFF009NAJ 172 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 137 bp overlap
ZFY 1 dataset
ChIP HepG2 ENCFF106ELT 78 bp overlap
ZGPAT 2 datasets
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 186 bp overlap
ChIP HepG2 ENCFF055YSO 193 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 146 bp overlap
ZNF181 1 dataset
ChIP HepG2 ENCFF222AKV 126 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 111 bp overlap
ZNF256 1 dataset
ChIP HepG2 ENCFF863RQR 141 bp overlap
ZNF264 1 dataset
ChIP HepG2 ENCFF453WJV 193 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 142 bp overlap
ZNF468 1 dataset
ChIP HepG2 ENCFF574PHK 193 bp overlap
ZNF483 1 dataset
ChIP HepG2 ENCFF464ZKH 179 bp overlap
ZNF510 1 dataset
ChIP HepG2 ENCFF088QOO 155 bp overlap
ZNF512B 1 dataset
ChIP HepG2 ENCFF126PJB 147 bp overlap
ZNF572 1 dataset
ChIP HepG2 ENCFF507EFS 93 bp overlap
ZNF704 1 dataset
ChIP HepG2 ENCFF408LBU 193 bp overlap
ZSCAN5A 1 dataset
ChIP HepG2 ENCFF633DFI 193 bp overlap
ZXDC 1 dataset
ChIP MCF-7 GSE97661.ZXDC.MCF-7 181 bp overlap