chr19 : 38,622,158 – 38,622,847
689 bp 35 TFs 2 linked genes
This 689 bp open chromatin element is linked to EIF3K and MAP4K1 and is bound by 35 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EIF3K 3.0 kb Proximal Proximity
MAP4K1 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:38,617,158 – 38,627,847
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_24h DE_24h-Arid3a_MA0151.1 6 bp overlap
CDX1 1 dataset
Motif DE_24h DE_24h-CDX1_MA0878.3 10 bp overlap
EGR1 1 dataset
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
GATA4 1 dataset
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
GATA6 4 datasets
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 660 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 606 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 666 bp overlap
Gata3 1 dataset
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Hmga1 1 dataset
Motif DE_24h DE_24h-Hmga1_MA2124.1 8 bp overlap
Hnf1A 2 datasets
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
IRF2 1 dataset
Motif DE_24h DE_24h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_24h DE_24h-IRF3_MA1418.2 17 bp overlap
IRF7 1 dataset
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_24h DE_24h-IRF8_MA0652.2 13 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 383 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 689 bp overlap
Lef1 1 dataset
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 112 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 635 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 424 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 315 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 325 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 677 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 689 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 689 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 448 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 497 bp overlap
SOX21 2 datasets
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
SREBF1 1 dataset
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
Six3 1 dataset
Motif DE_24h DE_24h-Six3_MA0631.2 11 bp overlap
Sox1 1 dataset
Motif DE_24h DE_24h-Sox1_MA0870.1 15 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF7 1 dataset
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
TRPS1 1 dataset
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap