chr2 : 11,713,852 – 11,714,367
515 bp 75 TFs 3 linked genes
This 515 bp open chromatin element is linked to LPIN1, GREB1, and E2F6 and is bound by 75 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LPIN1 32.6 kb Distal Multiome
GREB1 231.7 kb Distal Multiome
E2F6 247.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:11,708,852 – 11,719,367
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 257 bp overlap
ChIP K562 ENCFF938UXQ 347 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 218 bp overlap
BRD4 4 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 182 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 230 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 186 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 280 bp overlap
Bcl11B 1 dataset
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 225 bp overlap
ChIP K562 ENCFF963TXY 300 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 359 bp overlap
ChIP K562 ENCFF673OEZ 271 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 243 bp overlap
ChIP K562 ENCFF199GSZ 299 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 160 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 306 bp overlap
ChIP K562 ENCFF403WPG 166 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 217 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 297 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 186 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 357 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 90 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 223 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 143 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 155 bp overlap
GATA2 12 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 256 bp overlap
ChIP K-562 ENCSR257RKC.GATA2.K-562 277 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 153 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 219 bp overlap
ChIP K562 ENCFF088XQT 313 bp overlap
ChIP K562 ENCFF513FTZ 301 bp overlap
ChIP K562 ENCFF544PCK 239 bp overlap
ChIP SH-SY5Y ENCFF485YIB 275 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 231 bp overlap
ChIP SK-N-SH ENCFF764OZD 313 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 184 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 263 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 165 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 361 bp overlap
ChIP DE DE-GATA4-2 385 bp overlap
ChIP foregut GSE117136.GATA4.foregut 306 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 357 bp overlap
ChIP DE DE-GATA6-2 349 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 384 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 495 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 457 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 385 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 203 bp overlap
Gfi1B 2 datasets
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 358 bp overlap
ChIP K562 ENCFF968WBH 376 bp overlap
HOXB8 1 dataset
ChIP K-562 GSE121208.HOXB8.K-562 216 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 429 bp overlap
ChIP K562 ENCFF348IBL 307 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 321 bp overlap
KDM1A 5 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 322 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 210 bp overlap
ChIP K562 ENCFF128TYE 413 bp overlap
ChIP K562 ENCFF934ZRG 488 bp overlap
ChIP K562 ENCFF934ZRG 328 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 217 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 236 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 190 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 195 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 126 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 235 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 252 bp overlap
PBX1 1 dataset
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
PRDM1 1 dataset
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
PTBP1 1 dataset
ChIP K-562 GSE120104.PTBP1.K-562 228 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 351 bp overlap
ChIP K562 ENCFF248CGR 361 bp overlap
ChIP K562 ENCFF957ORK 361 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 233 bp overlap
REST 1 dataset
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
RFX1 5 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 224 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 185 bp overlap
ChIP K562 ENCFF421AVO 162 bp overlap
ChIP K562 ENCFF809XVG 134 bp overlap
RFX2 1 dataset
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 290 bp overlap
RUNX2 1 dataset
Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 133 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 288 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 467 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 314 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 200 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 185 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 132 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 168 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 187 bp overlap
TAL1 9 datasets
ChIP K-562 GSE107726.TAL1.K-562 377 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 151 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 170 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 196 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 187 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 233 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 205 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 175 bp overlap
ChIP K562 ENCFF620GMX 225 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 261 bp overlap
ChIP K562 ENCFF931DJY 336 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 309 bp overlap
ChIP K562 ENCFF319QZT 138 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 256 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 91 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 168 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 387 bp overlap
ChIP K562 ENCFF255RZG 139 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 332 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 249 bp overlap
ChIP K562 ENCFF361LXT 381 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF582 1 dataset
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
ZNF768 1 dataset
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap