chr20 : 20,102,068 – 20,103,125
1,057 bp 37 TFs 2 linked genes
This 1.1 kb open chromatin element is linked to CRNKL1 and NAA20 and is bound by 37 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CRNKL1 50.4 kb Distal Multiome
NAA20 85.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:20,097,068 – 20,108,125
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
AR 29 datasets
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 114 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 164 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 172 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 500 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 75 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 157 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 177 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 210 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 249 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 184 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 181 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 697 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 487 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 930 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 673 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 248 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 271 bp overlap
ChIP prostate GSE56288.AR.prostate 241 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 179 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 219 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 143 bp overlap
ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 294 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 362 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 513 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 428 bp overlap
ChIP prostate_1853_T GSE130408.AR.prostate_1853_T 311 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 189 bp overlap
ChIP prostate_P13_T GSE130408.AR.prostate_P13_T 238 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 214 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 281 bp overlap
BCL11A 3 datasets
Motif DE_36h DE_36h-BCL11A_MA2324.1 7 bp overlap
Motif DE_48h DE_48h-BCL11A_MA2324.1 7 bp overlap
Motif DE_60h DE_60h-BCL11A_MA2324.1 7 bp overlap
BRD4 1 dataset
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 216 bp overlap
CTCF 5 datasets
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 193 bp overlap
ChIP VCaP ENCFF858YQT 631 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 383 bp overlap
ChIP endodermal cell ENCFF471YCZ 135 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 491 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 368 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 229 bp overlap
ERF::FOXO1 1 dataset
Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 142 bp overlap
FOXA1 11 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 210 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 190 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 165 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 222 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 161 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 180 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 295 bp overlap
ChIP prostate_2078 GSE130408.FOXA1.prostate_2078 256 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 246 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 189 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 203 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1057 bp overlap
ChIP DE DE-FOXA2-2 1049 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 160 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 228 bp overlap
ChIP DE DE-GATA4-1 623 bp overlap
ChIP DE DE-GATA4-2 1057 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 1053 bp overlap
ChIP DE DE-GATA6-2 1057 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 370 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 458 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 237 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 456 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 418 bp overlap
HOXB13 14 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 64 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 241 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 251 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 244 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 182 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 179 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 323 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 138 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 184 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 401 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 201 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 289 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 166 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 210 bp overlap
MAFF 2 datasets
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MAFK 2 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 113 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 266 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 223 bp overlap
PRDM1 3 datasets
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 158 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 692 bp overlap
SETDB1 1 dataset
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 359 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 140 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 472 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 488 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 462 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 536 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 438 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 461 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 555 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 467 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 313 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 437 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 186 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 332 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 426 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
THAP1 3 datasets
Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
ZIM3 1 dataset
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 591 bp overlap
ZNF37A 3 datasets
ChIP HEK293 ENCFF953IYO 307 bp overlap
ChIP HEK293 ENCSR371LLY.ZNF37A.HEK293 376 bp overlap
ChIP HEK293 GSE76494.ZNF37A.HEK293 245 bp overlap
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