chr20 : 47,761,548 – 47,762,222
674 bp 87 TFs 2 linked genes
This 674 bp open chromatin element is linked to SULF2 and NCOA3 and is bound by 87 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SULF2 23.7 kb Distal Multiome
NCOA3 259.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:47,756,548 – 47,767,222
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 156 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 212 bp overlap
BRD4 8 datasets
ChIP MM1-S GSE45984.BRD4.MM1-S 202 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 156 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 162 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 254 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 225 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 251 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 92 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 141 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 224 bp overlap
CDK9 1 dataset
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 307 bp overlap
CHCHD3 1 dataset
ChIP HepG2 ENCFF430RKB 471 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 59 bp overlap
ChIP BLaER1 ENCFF364PUR 532 bp overlap
ChIP BLaER1 ENCFF460KDD 249 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DDX20 1 dataset
ChIP MCF-7 ENCFF142TOQ 245 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 104 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
E2F1 3 datasets
ChIP MCF-7 ENCFF692OYJ 286 bp overlap
ChIP MCF-7 ENCFF692OYJ 87 bp overlap
ChIP MM1-S GSE80661.E2F1.MM1-S 234 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 144 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 193 bp overlap
ELF4 1 dataset
ChIP HepG2 ENCFF752OAT 591 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 234 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 206 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 632 bp overlap
ChIP DE DE-FOXA2-2 512 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 674 bp overlap
ChIP DE DE-GATA4-2 674 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 167 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 674 bp overlap
ChIP DE DE-GATA6-2 674 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 646 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 674 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 674 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 674 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 674 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 674 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 674 bp overlap
GFI1 1 dataset
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCFF576OTX 361 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HCFC1 1 dataset
ChIP MCF-7 ENCFF595ZTV 192 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 175 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 175 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 417 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 506 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 329 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 385 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 177 bp overlap
MAFK 2 datasets
ChIP MCF-7 ENCFF558JLG 316 bp overlap
ChIP MCF-7 ENCSR555PBN.MAFK.MCF-7 165 bp overlap
MED1 6 datasets
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 187 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 341 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 194 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 237 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 199 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 206 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 403 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 265 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 297 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 196 bp overlap
MYC 2 datasets
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 323 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 148 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 136 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 190 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 221 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 245 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 178 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 266 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
ChIP MCF-7 ENCFF645GYL 163 bp overlap
Olig2 1 dataset
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POLR2A 3 datasets
ChIP MCF-7 ENCFF164XWP 154 bp overlap
ChIP MCF-7 ENCFF164XWP 356 bp overlap
ChIP neural cell ENCFF604SPB 302 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 137 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 495 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 296 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1619.2 8 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 59 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 145 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 178 bp overlap
RREB1 1 dataset
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCFF437VFY 89 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 198 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 218 bp overlap
SIX4 1 dataset
ChIP MCF-7 ENCFF919BLX 377 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 297 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 674 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 674 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 674 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 563 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 674 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 674 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 148 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 204 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 285 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 273 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 530 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 150 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
SP1 1 dataset
ChIP MCF-7 ENCFF202YLB 57 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCFF827PZY 250 bp overlap
SPI1 1 dataset
ChIP DC_LPS GSE123347.SPI1.DC_LPS 66 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 270 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 226 bp overlap
TBX3 1 dataset
ChIP HepG2 ENCFF178RIL 254 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 220 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 217 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 342 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 261 bp overlap
TFAP4 1 dataset
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
Tcf12 1 dataset
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 187 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 242 bp overlap
ChIP HepG2 ENCFF778UKV 235 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 229 bp overlap
ZNF227 1 dataset
ChIP MCF-7 ENCFF634YOG 331 bp overlap
ZNF317 1 dataset
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF331 1 dataset
ChIP MCF-7 ENCFF969JZR 205 bp overlap
ZNF592 1 dataset
ChIP MCF-7 ENCFF315RIM 371 bp overlap
ZNF687 3 datasets
ChIP GM12878 ENCFF233SGE 457 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 557 bp overlap
ChIP MCF-7 ENCFF440BFX 324 bp overlap