chr20 : 47,862,561 – 47,863,436
875 bp 89 TFs 2 linked genes
This 875 bp open chromatin element is linked to SULF2 and NCOA3 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SULF2 77.5 kb Distal Multiome
NCOA3 361.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:47,857,561 – 47,868,436
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 267 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 350 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 265 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 68 bp overlap
CBX1 3 datasets
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 348 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 188 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 54 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 108 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 215 bp overlap
DDX20 1 dataset
ChIP MCF-7 ENCFF142TOQ 245 bp overlap
DUX4 3 datasets
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 334 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 493 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 359 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 144 bp overlap
ESR1 2 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 338 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 135 bp overlap
EWSR1 1 dataset
ChIP K-562 ENCSR142YYA.EWSR1.K-562 189 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 282 bp overlap
Elf5 1 dataset
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 362 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 238 bp overlap
ChIP DE DE-FOXA2-1 642 bp overlap
ChIP DE DE-FOXA2-2 676 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 148 bp overlap
GABPA 1 dataset
ChIP MCF-7 ENCFF951HFC 515 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 181 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 300 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 767 bp overlap
ChIP DE DE-GATA4-2 863 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 302 bp overlap
ChIP foregut GSE117136.GATA4.foregut 478 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 405 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 341 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 681 bp overlap
ChIP DE DE-GATA6-2 755 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 510 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 667 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 570 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 760 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 692 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 562 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 704 bp overlap
ChIP foregut GSE117136.GATA6.foregut 343 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 292 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCFF576OTX 133 bp overlap
HSF1 2 datasets
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
ChIP MCF-7 ENCFF586GQF 185 bp overlap
HSF2 1 dataset
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_72h DE_72h-HSF4_MA0771.1 13 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 208 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 374 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 233 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 166 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 149 bp overlap
MITF 6 datasets
ChIP 501-mel GSE137522.MITF.501-mel 153 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 81 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 174 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 133 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 131 bp overlap
ChIP K562 ENCFF731XJJ 160 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCFF144ZFZ 306 bp overlap
MTA2 1 dataset
ChIP MCF-7 ENCFF342IDP 68 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 153 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 554 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 208 bp overlap
NBN 2 datasets
ChIP MCF-7 ENCFF608GKP 122 bp overlap
ChIP MCF-7 ENCFF608GKP 173 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 226 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 337 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFXL1 2 datasets
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 229 bp overlap
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 369 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 213 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 445 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 182 bp overlap
POU2F3 1 dataset
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU5F1 1 dataset
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
PPP1R10 1 dataset
ChIP MCF-7 ENCFF027ROL 351 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 91 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 204 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 83 bp overlap
RFX5 1 dataset
ChIP MCF-7 ENCFF983ILY 173 bp overlap
RNF2 3 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 702 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 251 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 491 bp overlap
SETDB1 4 datasets
ChIP HEK293 ENCFF676PLV 717 bp overlap
ChIP HEK293 ENCFF676PLV 530 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 438 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 451 bp overlap
SIX4 1 dataset
ChIP MCF-7 ENCFF919BLX 109 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 815 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 438 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 801 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 618 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 156 bp overlap
SMARCA2 4 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 317 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 201 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 273 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 287 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 297 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 327 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 415 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 524 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 727 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 485 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 537 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 595 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 199 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 218 bp overlap
TBX19 1 dataset
Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 230 bp overlap
TBXT 1 dataset
Motif DE_72h DE_72h-TBXT_MA0009.2 16 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 233 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 233 bp overlap
TEF 1 dataset
Motif DE_72h DE_72h-TEF_MA0843.2 10 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 117 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 75 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 295 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 258 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF379OSU 501 bp overlap
ZNF410 1 dataset
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF507 2 datasets
ChIP MCF-7 ENCFF080XWY 63 bp overlap
ChIP MCF-7 ENCFF080XWY 268 bp overlap
ZNF574 2 datasets
ChIP MCF-7 ENCFF293CGZ 397 bp overlap
ChIP MCF-7 ENCFF293CGZ 345 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 437 bp overlap
ZNF772 1 dataset
ChIP HepG2 ENCFF728OGE 537 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 244 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 210 bp overlap