chr20 : 48,858,252 – 48,858,759
507 bp 100 TFs 3 linked genes
This 507 bp open chromatin element is linked to PREX1, ARFGEF2, and CSE1L and is bound by 100 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PREX1 30.6 kb Distal Multiome
ARFGEF2 63.1 kb Distal Multiome
CSE1L 187.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:48,853,252 – 48,863,759
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 359 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 103 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 58 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 193 bp overlap
BRCA2 1 dataset
ChIP MCF-7 ENCFF531NNL 138 bp overlap
BRD2 3 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 426 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 317 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 309 bp overlap
BRD3 3 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 507 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 108 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 243 bp overlap
BRD4 11 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 336 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 255 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 476 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 194 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 224 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 255 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 501 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 213 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 479 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 507 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 232 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 189 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 166 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRC.CREB1.A-549 115 bp overlap
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 191 bp overlap
CREBBP 1 dataset
ChIP monocyte_IFNg GSE131294.CREBBP.monocyte_IFNg 135 bp overlap
CTCF 2 datasets
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 229 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 277 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 96 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 365 bp overlap
ChIP K562 ENCFF688PUB 507 bp overlap
ELF1 7 datasets
ChIP K-562 ENCSR502OEK.ELF1.K-562 167 bp overlap
ChIP K-562 ENCSR975SSR.ELF1.K-562 136 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 79 bp overlap
ChIP K562 ENCFF886KFV 337 bp overlap
ChIP MCF-7 ENCFF305BNP 237 bp overlap
ChIP MCF-7 ENCFF687CWI 174 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 78 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 228 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 291 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 347 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 288 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 132 bp overlap
ESR1 9 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 452 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 313 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 459 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 507 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 359 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 485 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 253 bp overlap
ChIP T-47D ENCSR000BQD.ESR1.T-47D 112 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 213 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 209 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 507 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 312 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 141 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 408 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 340 bp overlap
ChIP DE DE-GATA4-2 360 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 372 bp overlap
ChIP DE DE-GATA6-2 396 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 483 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 485 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 498 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 503 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 468 bp overlap
ChIP foregut GSE117136.GATA6.foregut 369 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 403 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 110 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 204 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 338 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 293 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 368 bp overlap
ChIP K562 ENCFF348IBL 143 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 192 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 335 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 379 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 377 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 55 bp overlap
KAT2B 1 dataset
ChIP A-549 ENCSR356WVQ.KAT2B.A-549 353 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 132 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 219 bp overlap
ChIP K562 ENCFF320EQC 327 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 90 bp overlap
MITF 5 datasets
ChIP 501-mel GSE61965.MITF.501-mel 197 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 197 bp overlap
ChIP K562 ENCFF731XJJ 425 bp overlap
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 215 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 212 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 245 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 110 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 119 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 166 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 343 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 273 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 76 bp overlap
POLR2A 4 datasets
ChIP MCF-7 ENCFF309IKZ 229 bp overlap
ChIP spleen ENCFF044PYR 307 bp overlap
ChIP transverse colon ENCFF607LKE 294 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 307 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 436 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 149 bp overlap
REST 1 dataset
ChIP K562 ENCFF685YZN 245 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 128 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF437VFY 420 bp overlap
ChIP MCF-7 ENCFF437VFY 414 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 181 bp overlap
SMAD2 3 datasets
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 225 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 308 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 507 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 498 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 507 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 507 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 507 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 507 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 239 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 265 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 371 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 278 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 322 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 107 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 228 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 79 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 136 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 133 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 117 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 126 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 129 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 109 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 126 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 228 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 156 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 129 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 102 bp overlap
STAT3 5 datasets
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 85 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 150 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 406 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 273 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 174 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 219 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 438 bp overlap
Tfcp2l1 1 dataset
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
USF1 4 datasets
ChIP A-549 ENCSR000BJB.USF1.A-549 67 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 112 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 75 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 100 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 301 bp overlap
YBX1 1 dataset
ChIP MCF-7 ENCFF783FFV 252 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 95 bp overlap
ZBTB1 1 dataset
ChIP MCF-7 ENCFF466DUW 331 bp overlap
ZBTB24 1 dataset
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 157 bp overlap
ZFX 3 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 124 bp overlap
ChIP K562 ENCFF169LZT 243 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 352 bp overlap
ZKSCAN3 1 dataset
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF432NXE 326 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
ChIP HEK293 GSE76494.ZNF263.HEK293 75 bp overlap
ZNF623 1 dataset
ChIP HEK293 ENCFF505YHP 99 bp overlap
ZNF7 1 dataset
ChIP K562 ENCFF096OHS 323 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 105 bp overlap
ZNF75A 1 dataset
ChIP K562 ENCFF410JIO 236 bp overlap
ZNF8 1 dataset
ChIP MCF-7 ENCFF142XPL 351 bp overlap