chr20 : 56,748,308 – 56,749,036
728 bp 90 TFs 2 linked genes
This 728 bp open chromatin element is linked to TFAP2C and RTF2 and is bound by 90 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TFAP2C 119.4 kb Distal Multiome
RTF2 280.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:56,743,308 – 56,754,036
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 6 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 134 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 381 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 211 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 318 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 136 bp overlap
ChIP MCF-7_estrogen GSE123284.ARID1A.MCF-7_estrogen 106 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 147 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 94 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 351 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 258 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 237 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 527 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 194 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 194 bp overlap
BRD4 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 213 bp overlap
CTBP1 2 datasets
ChIP MCF-7 ENCFF969VBY 92 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 256 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 326 bp overlap
DMRTA2 2 datasets
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 108 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 196 bp overlap
DPRX 2 datasets
Motif DE_24h DE_24h-DPRX_MA1480.2 9 bp overlap
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
DUXA 2 datasets
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCFF692OYJ 346 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 145 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 557 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 335 bp overlap
ESR1 4 datasets
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 267 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 50 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 52 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 92 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 109 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 88 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 179 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 305 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 239 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCFF282FWZ 111 bp overlap
FOXP1 3 datasets
ChIP Hep-G2 ENCSR029LBT.FOXP1.Hep-G2 245 bp overlap
ChIP HepG2 ENCFF717IHQ 314 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 251 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 158 bp overlap
GATA1 2 datasets
Motif DE_24h DE_24h-GATA1_MA0035.5 7 bp overlap
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 2 datasets
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 375 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 257 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 373 bp overlap
ChIP DE DE-GATA6-2 548 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 584 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 632 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 676 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 698 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 703 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 436 bp overlap
GRHL1 2 datasets
ChIP MCF-7 GSE140185.GRHL1.MCF-7 295 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.GRHL1.MCF-7_ARID1A-KO 60 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 212 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 154 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 359 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 91 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 102 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 137 bp overlap
IRF4 1 dataset
Motif DE_24h DE_24h-IRF4_MA1419.2 14 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 597 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 467 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 694 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 728 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 213 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCFF169IXS 75 bp overlap
MEF2B 2 datasets
Motif DE_24h DE_24h-MEF2B_MA0660.1 12 bp overlap
Motif DE_36h DE_36h-MEF2B_MA0660.1 12 bp overlap
MEF2C 2 datasets
Motif DE_24h DE_24h-MEF2C_MA0497.2 11 bp overlap
Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 64 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 91 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 505 bp overlap
NBN 1 dataset
ChIP HepG2 ENCFF781RIL 341 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCFF925CGH 308 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 60 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 208 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 317 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 97 bp overlap
PAX3 2 datasets
Motif DE_24h DE_24h-PAX3_MA0780.1 10 bp overlap
Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 379 bp overlap
PHOX2A 2 datasets
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 102 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 569 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 647 bp overlap
PROP1 2 datasets
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Pax7 2 datasets
Motif DE_24h DE_24h-Pax7_MA0680.3 10 bp overlap
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
RAD21 1 dataset
ChIP MCF-7 ENCFF694KOM 56 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 344 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 180 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 609 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 627 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 496 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 397 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 561 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 346 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 304 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 240 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 105 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 215 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 275 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 326 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 424 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 68 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.SMARCA4.MCF-7_ARID1A-KO 99 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 55 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 475 bp overlap
SMARCB1 7 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 74 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 200 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 122 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 105 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 76 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 98 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 109 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 249 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 335 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 237 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 265 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 94 bp overlap
STAT3 3 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 219 bp overlap
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 103 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 90 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 322 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 217 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 185 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 86 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 185 bp overlap
TSC22D1 1 dataset
ChIP MCF-7 ENCFF552PAC 220 bp overlap
TSC22D2 1 dataset
ChIP MCF-7 ENCFF588BUN 297 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 197 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 197 bp overlap
YY1AP1 6 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 91 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 58 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 93 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 296 bp overlap
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 136 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 146 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF299BWK 80 bp overlap
ZNF512B 1 dataset
ChIP MCF-7 ENCFF233IPF 282 bp overlap
ZNF549 2 datasets
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap