chr20 : 56,750,435 – 56,750,924
489 bp 88 TFs 2 linked genes
This 489 bp open chromatin element is linked to TFAP2C and RTF2 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TFAP2C 121.3 kb Distal Multiome
RTF2 282.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:56,745,435 – 56,755,924
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 392 bp overlap
AR 3 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 292 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 173 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 145 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 365 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 239 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 163 bp overlap
BRD4 4 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 410 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 354 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 354 bp overlap
ChIP hESC GSE33281.BRD4.hESC 66 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 297 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 304 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 232 bp overlap
CREBBP_M768 2 datasets
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 160 bp overlap
DMRTA1 3 datasets
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DUX4 4 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 237 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 263 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 489 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 61 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 323 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 268 bp overlap
ESR1 5 datasets
ChIP HCC1428_TLED GSE27300.ESR1.HCC1428_TLED 245 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 222 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 345 bp overlap
ChIP MCF-7_E2 GSE71276.ESR1.MCF-7_E2 177 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 442 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 489 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 380 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 204 bp overlap
ETV5::HOXA2 3 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_24h DE_24h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_72h DE_72h-ETV5HOXA2_MA1948.2 12 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 458 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 52 bp overlap
ChIP SK-N-MC ENCFF674XUJ 461 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 283 bp overlap
GFI1 3 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
Gfi1B 3 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HCFC1 1 dataset
ChIP Hep-G2 ENCSR529JYA.HCFC1.Hep-G2 116 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 257 bp overlap
HMBOX1 3 datasets
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_72h DE_72h-HMBOX1_MA0895.2 7 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 327 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM5B 2 datasets
ChIP MCF-7 GSE46055.KDM5B.MCF-7 189 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 117 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 309 bp overlap
MAX 7 datasets
ChIP H1 ENCFF601FOM 261 bp overlap
ChIP H1 ENCFF914VQY 262 bp overlap
ChIP Ishikawa ENCFF064TDQ 340 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 164 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 65 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 235 bp overlap
ChIP WTC11 ENCFF223QFY 401 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 183 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 190 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 193 bp overlap
MYC 2 datasets
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 121 bp overlap
MYCN 1 dataset
ChIP BE2C GSE80151.MYCN.BE2C 185 bp overlap
MYOD1 5 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 248 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 147 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 314 bp overlap
NCOA3 1 dataset
ChIP NCI-H3396_E2 GSE32349.NCOA3.NCI-H3396_E2 318 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NFYA 3 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYB 11 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 286 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 209 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 277 bp overlap
ChIP WTC11 ENCFF751ZTQ 178 bp overlap
NFYC 5 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif DE_24h DE_24h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 198 bp overlap
ChIP HepG2 ENCFF836FYP 351 bp overlap
NOTCH1 2 datasets
ChIP HCC1599 GSE116871.NOTCH1.HCC1599 251 bp overlap
ChIP MDA-MB-157 GSE116868.NOTCH1.MDA-MB-157 303 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 362 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 141 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 368 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 390 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 239 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 224 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 294 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 186 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 177 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 272 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 288 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 188 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 340 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 244 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 255 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 472 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SIX1 3 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 446 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 202 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 145 bp overlap
SNAI2 3 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SNAI3 3 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 335 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 152 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 301 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 294 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 306 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 182 bp overlap
Six4 3 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Motif DE_72h DE_72h-Six4_MA2001.2 7 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 196 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 187 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 228 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 144 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 239 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 202 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 121 bp overlap
ChIP WTC11 ENCFF139JAW 329 bp overlap
VEZF1 3 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 282 bp overlap
ZEB1 4 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 266 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 105 bp overlap
ZNF675 3 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap