chr2 : 17,747,989 – 17,748,437
448 bp 60 TFs 2 linked genes
This 448 bp open chromatin element is linked to SMC6 and GEN1 and is bound by 60 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SMC6 5.4 kb Proximal Proximity
GEN1 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:17,742,989 – 17,753,437
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 137 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 92 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 168 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 258 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 161 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 147 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 165 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 154 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 186 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 235 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 325 bp overlap
FOSL2 5 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 415 bp overlap
ChIP A-549 ENCSR000BQO.FOSL2.A-549 230 bp overlap
ChIP A549 ENCFF195CES 312 bp overlap
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 95 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 92 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 142 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 253 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 208 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 312 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 270 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 155 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 448 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 327 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 231 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 409 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 448 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 361 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 222 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 200 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 116 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 252 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 50 bp overlap
ChIP K562 ENCFF236IUS 87 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 283 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 237 bp overlap
POU3F2 1 dataset
ChIP hiPSC GSE149017.POU3F2.hiPSC 124 bp overlap
POU5F1 18 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 260 bp overlap
ChIP GM23338 ENCFF333SNB 272 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 448 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 388 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 386 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 221 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 179 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 161 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 295 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 249 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 148 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 413 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 448 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 305 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 228 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 217 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 172 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 448 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 448 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 306 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 154 bp overlap
SIN3A 1 dataset
ChIP A549 ENCFF752ATT 211 bp overlap
SMARCA4 16 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 235 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 208 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 254 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 179 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 230 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 299 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 289 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 215 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 248 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 142 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 221 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 304 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 426 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 367 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 203 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 220 bp overlap
SMARCB1 1 dataset
ChIP TTC-1240_R377H GSE124903.SMARCB1.TTC-1240_R377H 247 bp overlap
SMARCC1 5 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 147 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 215 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 448 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 232 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 223 bp overlap
SOX2 2 datasets
ChIP hiPSC GSE56567.SOX2.hiPSC 293 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 278 bp overlap
SP1 3 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 91 bp overlap
ChIP A-549 ENCSR000BPE.SP1.A-549 157 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 373 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 162 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 79 bp overlap
TBP 3 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 73 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 233 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 165 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 225 bp overlap
TEAD4 1 dataset
ChIP HepG2 ENCFF006QNB 68 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZBTB26 2 datasets
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZBTB40 3 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 223 bp overlap
ChIP MCF-7 ENCFF044DWL 376 bp overlap
ChIP MCF-7 ENCFF044DWL 320 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 210 bp overlap
Zfx 2 datasets
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap