chr21 : 31,524,028 – 31,524,533
505 bp 76 TFs 3 linked genes
This 505 bp open chromatin element is linked to SOD1, TIAM1, and SCAF4 and is bound by 76 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOD1 135.3 kb Distal Multiome
TIAM1 180.0 kb Distal Multiome
SCAF4 207.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:31,519,028 – 31,529,533
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
BRCA1 1 dataset
ChIP H1 ENCFF288NOI 301 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 193 bp overlap
CHD2 4 datasets
ChIP H1 ENCFF991MKH 132 bp overlap
ChIP K-562 ENCSR000EHD.CHD2.K-562 184 bp overlap
ChIP K562 ENCFF857WME 337 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 245 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 56 bp overlap
EGR1 6 datasets
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
Motif DE_48h DE_48h-EGR1_MA0162.5 10 bp overlap
Motif ES_0h ES_0h-EGR1_MA0162.5 10 bp overlap
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 157 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 115 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 289 bp overlap
EGR3 3 datasets
Motif DE_24h DE_24h-EGR3_MA0732.2 11 bp overlap
Motif DE_48h DE_48h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EGR4 3 datasets
Motif DE_24h DE_24h-EGR4_MA0733.2 11 bp overlap
Motif DE_48h DE_48h-EGR4_MA0733.2 11 bp overlap
Motif ES_0h ES_0h-EGR4_MA0733.2 11 bp overlap
EOMES 1 dataset
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF937OPV 205 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 255 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 183 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 505 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 505 bp overlap
HSF4 2 datasets
Motif DE_24h DE_24h-HSF4_MA0771.1 13 bp overlap
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 138 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 159 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 170 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 399 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 275 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 156 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 487 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 174 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 213 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 434 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 329 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 188 bp overlap
MAZ 3 datasets
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 242 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 87 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 148 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NR1D2 2 datasets
Motif DE_24h DE_24h-NR1D2_MA1532.2 15 bp overlap
Motif DE_48h DE_48h-NR1D2_MA1532.2 15 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 180 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 371 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
PATZ1 3 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 387 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 291 bp overlap
REST 5 datasets
ChIP H1 ENCFF203SWY 457 bp overlap
ChIP H1 ENCFF203SWY 257 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 288 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 230 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 250 bp overlap
RREB1 2 datasets
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 328 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 328 bp overlap
SP2 2 datasets
ChIP HEK293 ENCSR807LQP.SP2.HEK293 244 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 230 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 258 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 354 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 294 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT3 4 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 298 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 241 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 343 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 353 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX4 1 dataset
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 319 bp overlap
Wt1 3 datasets
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 371 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 237 bp overlap
ZNF143 2 datasets
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF148 2 datasets
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 184 bp overlap
ZNF281 2 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 164 bp overlap
ZNF341 5 datasets
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCFF944VMC 498 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 505 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 300 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 262 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 155 bp overlap
ZNF384 1 dataset
ChIP HEK293T ENCFF019DZX 142 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 213 bp overlap
ZNF561 3 datasets
ChIP HEK293 ENCFF399XKF 441 bp overlap
ChIP HEK293 ENCFF399XKF 256 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 386 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 321 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 300 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 432 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 268 bp overlap
ZNF677 1 dataset
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF680 2 datasets
ChIP HEK293 ENCFF418WHE 365 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 310 bp overlap
ZNF740 3 datasets
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
ZNF76 2 datasets
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap