chr21 : 45,975,731 – 45,976,305
574 bp 48 TFs 3 linked genes
This 574 bp open chromatin element is linked to ENSG00000274248, ENSG00000289224, and COL6A1 and is bound by 48 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000274248 1.2 kb Proximal Proximity
ENSG00000289224 1.4 kb Proximal Proximity
COL6A1 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:45,970,731 – 45,981,305
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
EP300 1 dataset
ChIP Ishikawa ENCFF364ZWT 246 bp overlap
EZH2 2 datasets
ChIP neural progenitor cell ENCFF018MKA 56 bp overlap
ChIP neural progenitor cell ENCFF472NFV 532 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOXA2 1 dataset
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
FOXK1 1 dataset
Motif DE_24h DE_24h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_24h DE_24h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_24h DE_24h-FOXL1_MA0033.2 7 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCFF578VDD 351 bp overlap
FOXO4 1 dataset
Motif DE_24h DE_24h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_24h DE_24h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_24h DE_24h-FOXP3_MA0850.1 7 bp overlap
FOXS1 1 dataset
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_24h DE_24h-Foxf1_MA1606.2 7 bp overlap
Foxo1 1 dataset
Motif DE_24h DE_24h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_24h DE_24h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_24h DE_24h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 338 bp overlap
ChIP DE DE-GATA4-2 534 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 434 bp overlap
ChIP DE DE-GATA6-2 423 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 548 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 549 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 552 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 528 bp overlap
GLI3 1 dataset
Motif DE_24h DE_24h-GLI3_MA1491.3 15 bp overlap
GLIS1 3 datasets
Motif DE_24h DE_24h-GLIS1_MA0735.2 15 bp overlap
ChIP HEK293 ENCFF299RSE 254 bp overlap
ChIP HEK293 ENCFF299RSE 138 bp overlap
GLIS2 1 dataset
Motif DE_24h DE_24h-GLIS2_MA0736.1 14 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 524 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 557 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 507 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF133OLU 146 bp overlap
KLF13 1 dataset
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCFF589FCY 209 bp overlap
POLR2A 1 dataset
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 570 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 300 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 125 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 574 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 574 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 574 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 574 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 574 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 296 bp overlap
TBX21 1 dataset
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 344 bp overlap
ChIP Ishikawa ENCFF467DDW 127 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 80 bp overlap
VEZF1 1 dataset
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
WT1 1 dataset
ChIP HEK293 ENCFF906HIR 161 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF341 1 dataset
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
ZNF684 1 dataset
Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap
ZNF692 1 dataset
Motif DE_24h DE_24h-ZNF692_MA1986.2 8 bp overlap
Znf423 1 dataset
Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap