chr22 : 28,736,360 – 28,736,647
287 bp 92 TFs 2 linked genes
This 287 bp open chromatin element is linked to CHEK2 and HSCB and is bound by 92 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CHEK2 5.2 kb Proximal Proximity
HSCB 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr22:28,731,360 – 28,741,647
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 287 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 280 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 173 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 173 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 287 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 202 bp overlap
BRD4 2 datasets
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 283 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 254 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 147 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 159 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 270 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 208 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 157 bp overlap
ESR2 1 dataset
Motif DE_24h DE_24h-ESR2_MA0258.2 15 bp overlap
ETS1 2 datasets
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 287 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 162 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 287 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 127 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 134 bp overlap
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 287 bp overlap
ChIP DE DE-GATA4-2 287 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 287 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 286 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 287 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 287 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 258 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 279 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 287 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 219 bp overlap
KLF4 3 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 219 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 259 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 173 bp overlap
MSC 1 dataset
Motif DE_24h DE_24h-MSC_MA0665.1 10 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 118 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 287 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 232 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 287 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 287 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 186 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 287 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 287 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 287 bp overlap
ChIP hESC GSE20650.NANOG.hESC 223 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NKX6-1 1 dataset
Motif DE_24h DE_24h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
NR1D2 1 dataset
Motif DE_24h DE_24h-NR1D2_MA1532.2 15 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 79 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 17 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 287 bp overlap
ChIP GM23338 ENCFF333SNB 284 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 287 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 287 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 287 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 159 bp overlap
ChIP OSvK GSE81899.POU5F1.OSvK 207 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 166 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 249 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 282 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 177 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 287 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 287 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 282 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 185 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 287 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 287 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PPARG 1 dataset
Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 154 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 287 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 287 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 229 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 245 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 287 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 287 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 217 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 208 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 215 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 214 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 287 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 287 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 150 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 233 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 287 bp overlap
SOX2 3 datasets
ChIP OSvKM GSE81899.SOX2.OSvKM 256 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 287 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 151 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 249 bp overlap
SPIC 1 dataset
Motif DE_24h DE_24h-SPIC_MA0687.2 13 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 200 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 287 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 176 bp overlap
TBP 3 datasets
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 212 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 205 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 218 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 287 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 178 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 172 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Tcf21 1 dataset
Motif DE_24h DE_24h-Tcf21_MA0832.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 226 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 65 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 89 bp overlap
ZNF214 1 dataset
Motif DE_24h DE_24h-ZNF214_MA1975.2 13 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF528 1 dataset
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 166 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 132 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 71 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap