chr22 : 32,643,108 – 32,643,606
498 bp 90 TFs 3 linked genes
This 498 bp open chromatin element is linked to TIMP3, FBXO7, and RTCB and is bound by 90 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TIMP3 158.3 kb Distal Multiome
FBXO7 168.6 kb Distal Multiome
RTCB 231.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr22:32,638,108 – 32,648,606
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
BCL6 1 dataset
Motif DE_72h DE_72h-BCL6_MA0463.3 13 bp overlap
BCL6B 1 dataset
Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap
CREB3L1 1 dataset
Motif DE_72h DE_72h-CREB3L1_MA0839.2 13 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EOMES 2 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 197 bp overlap
FOXA1 1 dataset
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 399 bp overlap
ChIP DE DE-FOXA2-2 498 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXF2 1 dataset
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 420 bp overlap
ChIP DE DE-GATA4-2 498 bp overlap
ChIP foregut GSE117136.GATA4.foregut 336 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 392 bp overlap
ChIP DE DE-GATA6-2 486 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 457 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 426 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 451 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 423 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 429 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
ChIP foregut GSE117136.GATA6.foregut 283 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HNRNPK 6 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 111 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 106 bp overlap
ChIP HepG2 ENCFF493GNS 212 bp overlap
ChIP HepG2 ENCFF826MXP 209 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 80 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 79 bp overlap
HOXB4 1 dataset
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 227 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 305 bp overlap
MEF2A 1 dataset
Motif DE_72h DE_72h-MEF2A_MA0052.5 10 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 200 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 179 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 116 bp overlap
NFIA 2 datasets
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
NKX6-3 1 dataset
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
NR2F1 1 dataset
Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap
NR5A1 1 dataset
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
Nr5A2 1 dataset
Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
PAX4 1 dataset
Motif DE_72h DE_72h-PAX4_MA0068.2 8 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 361 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 324 bp overlap
POU6F1 1 dataset
Motif DE_72h DE_72h-POU6F1_MA1549.2 7 bp overlap
RFX7 1 dataset
Motif DE_72h DE_72h-RFX7_MA1554.2 8 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 421 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 263 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 372 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 294 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 478 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 373 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 331 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 343 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
THRB 1 dataset
Motif DE_72h DE_72h-THRB_MA1575.2 17 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZBTB32 1 dataset
Motif DE_72h DE_72h-ZBTB32_MA1580.1 10 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZNF135 1 dataset
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF574 1 dataset
Motif DE_72h DE_72h-ZNF574_MA1982.2 14 bp overlap
ZNF680 1 dataset
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap
Znf423 1 dataset
Motif DE_72h DE_72h-Znf423_MA0116.1 15 bp overlap