chrX : 19,291,130 – 19,291,659
529 bp 87 TFs 3 linked genes
This 529 bp open chromatin element is linked to PDHA1, ADGRG2, and MAP3K15 and is bound by 87 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PDHA1 52.6 kb Distal Multiome
ADGRG2 168.8 kb Distal Multiome
MAP3K15 224.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:19,286,130 – 19,296,659
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
BACH1 3 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 131 bp overlap
ChIP H-1_DE GSE126661.BRD3.H-1_DE 212 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 205 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 199 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 118 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 505 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
EZH2 8 datasets
ChIP HepG2 ENCFF912EIW 206 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 163 bp overlap
ChIP PC-9 ENCFF152BST 224 bp overlap
ChIP PC-9 ENCFF152BST 391 bp overlap
ChIP PC-9 ENCFF634ONR 81 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 529 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 230 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 202 bp overlap
FOS::JUNB 3 datasets
Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_24h DE_24h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_36h DE_36h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 3 datasets
Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_24h DE_24h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_36h DE_36h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 3 datasets
Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_24h DE_24h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_36h DE_36h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1::JUN 3 datasets
Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_36h DE_36h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 3 datasets
Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_36h DE_36h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 3 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_36h DE_36h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 5 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 291 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 271 bp overlap
FOSL2::JUN 3 datasets
Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_24h DE_24h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_36h DE_36h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 3 datasets
Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_24h DE_24h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_36h DE_36h-FOSL2JUNB_MA1138.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 432 bp overlap
ChIP DE DE-FOXA2-2 296 bp overlap
FOXH1 1 dataset
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 443 bp overlap
ChIP DE DE-GATA4-2 452 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 408 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 371 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 396 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 458 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 418 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 458 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 378 bp overlap
Gfi1B 1 dataset
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 373 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 404 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 528 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 410 bp overlap
JUN::JUNB 3 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_24h DE_24h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 223 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 247 bp overlap
MYF5 1 dataset
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 529 bp overlap
Neurod2 2 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 373 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 453 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 128 bp overlap
SMAD2 7 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 277 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 227 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 497 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 282 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 529 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 529 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 529 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 515 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 529 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 525 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 529 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 178 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 270 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 243 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 195 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 266 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 191 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 397 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 217 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 354 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 238 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 231 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 376 bp overlap
SPDEF 1 dataset
Motif DE_24h DE_24h-SPDEF_MA0686.2 10 bp overlap
SPI1 4 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 118 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 92 bp overlap
ChIP K562 ENCFF410ORC 143 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 92 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 211 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 315 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 438 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 300 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 342 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 216 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
ZBTB26 1 dataset
Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap
ZFP14 2 datasets
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZIC1 1 dataset
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 61 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF667 1 dataset
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
ZNF75D 3 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF768 1 dataset
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
Zfp335 3 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zfp809 2 datasets
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap