chrX : 40,004,276 – 40,004,537
261 bp 59 TFs 2 linked genes
This 261 bp open chromatin element is linked to ENSG00000289122 and LINC03053 and is bound by 59 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289122 1.8 kb Proximal Proximity
LINC03053 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:39,999,276 – 40,009,537
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_TCDD_1d GSE90550.AHR.MCF-7_TCDD_1d 144 bp overlap
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 261 bp overlap
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 163 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 109 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 125 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 107 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 261 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 54 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 211 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 156 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 261 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 161 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 172 bp overlap
ESR1 60 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 261 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 215 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 196 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 187 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 168 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 163 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 158 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 147 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 142 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 201 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 186 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 217 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 99 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 171 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 146 bp overlap
ChIP MCF-7_E2 ERP000380.ESR1.MCF-7_E2 155 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 147 bp overlap
ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 114 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 158 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 113 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 215 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 138 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 133 bp overlap
ChIP MCF-7_E2_10M GSE54855.ESR1.MCF-7_E2_10M 165 bp overlap
ChIP MCF-7_E2_40M GSE54855.ESR1.MCF-7_E2_40M 159 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 189 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 178 bp overlap
ChIP MCF-7_E2_5M GSE54855.ESR1.MCF-7_E2_5M 137 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 171 bp overlap
ChIP MCF-7_E2_TAM ERP000380.ESR1.MCF-7_E2_TAM 147 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 145 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 103 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 261 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 169 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 166 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 179 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 171 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 54 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 143 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 128 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 261 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 232 bp overlap
ChIP MCF-7_estradiol-aldosterone_4h GSE99626.ESR1.MCF-7_estradiol-aldosterone_4h 241 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 212 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 201 bp overlap
ChIP MCF-7_estrogen GSE133941.ESR1.MCF-7_estrogen 168 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 187 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 261 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 178 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 172 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 162 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 140 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 140 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 179 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 121 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 202 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 208 bp overlap
ChIP T-47D-B_E2 GSE80358.ESR1.T-47D-B_E2 181 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 261 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 186 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 106 bp overlap
FOXA1 3 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 193 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 89 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 261 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 114 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 136 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 261 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 261 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 261 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 261 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 174 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 125 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 172 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 231 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 215 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 236 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 261 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 61 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 195 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 126 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 117 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 114 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 115 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 261 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 187 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 191 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 184 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 259 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 186 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 261 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 261 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 169 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 261 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 261 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 261 bp overlap
ChIP hESC GSE20650.NANOG.hESC 165 bp overlap
ChIP hESC GSE18292.NANOG.hESC 114 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 120 bp overlap
NIPBL 1 dataset
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 224 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 161 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 261 bp overlap
POU5F1 7 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 261 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 261 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 231 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 207 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 189 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 261 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 199 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 261 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 197 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 158 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 122 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 242 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 162 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 183 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 249 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 261 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 261 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 182 bp overlap
SMARCA4 3 datasets
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 85 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 208 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 261 bp overlap
SMARCC1 3 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 197 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 59 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 215 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 261 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 254 bp overlap
STAT3 2 datasets
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 64 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 142 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 261 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 216 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 221 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 198 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 261 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 261 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 136 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 136 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 88 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 251 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 150 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 53 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 153 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 245 bp overlap