chrX : 47,198,176 – 47,198,654
478 bp 34 TFs 2 linked genes
This 478 bp open chromatin element is linked to INE1 and UBA1 and is bound by 34 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
INE1 6.3 kb Proximal Proximity
UBA1 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:47,193,176 – 47,203,654
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 222 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 230 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 268 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 266 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 478 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 478 bp overlap
ChIP DE DE-FOXA2-2 478 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 478 bp overlap
ChIP DE DE-GATA4-2 478 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 299 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 478 bp overlap
ChIP DE DE-GATA6-2 478 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 428 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 434 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 358 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 478 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 478 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 412 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 454 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 357 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 120 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 409 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 335 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 459 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 221 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 301 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 152 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 77 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 126 bp overlap
PGR 1 dataset
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 182 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 413 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 404 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 435 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 404 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 269 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 326 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 439 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 478 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 478 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 478 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 478 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 478 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 478 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 478 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 256 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 391 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 217 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 180 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 349 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 178 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 384 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 185 bp overlap
SMARCA4 2 datasets
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 330 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 253 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 106 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 120 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 385 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 183 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 207 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 149 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 401 bp overlap
ChIP HepG2 ENCFF490FFQ 371 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 256 bp overlap