chrX : 55,868,198 – 55,868,947
749 bp 12 TFs 2 linked genes
This 749 bp open chromatin element is linked to ENSG00000227486 and RRAGB and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000227486 39.7 kb Distal Multiome
RRAGB 150.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:55,863,198 – 55,873,947
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 50 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 567 bp overlap
ChIP DE DE-FOXA2-2 308 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 652 bp overlap
ChIP DE DE-GATA4-2 749 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 747 bp overlap
ChIP DE DE-GATA6-2 749 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 749 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 749 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 749 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 378 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 494 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 274 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 575 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 499 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 149 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 215 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 630 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 276 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 749 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 749 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 749 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 749 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 749 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 749 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 749 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 749 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 747 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 749 bp overlap