chrX : 107,355,186 – 107,356,118
932 bp 63 TFs 4 linked genes
This 932 bp open chromatin element is linked to 4 target genes and is bound by 63 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DNAJA1P3 2.3 kb Proximal Proximity
RBM41 236.8 kb Distal Multiome
PRPS1 272.8 kb Distal Multiome
MORC4 355.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:107,350,186 – 107,361,118
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 407 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 158 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 315 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 208 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 228 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 288 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 329 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 92 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 207 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 162 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 263 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 442 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 433 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 262 bp overlap
ELK4 1 dataset
ChIP HEK293 ENCFF309WLN 355 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 516 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 214 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 113 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 301 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 716 bp overlap
ChIP DE DE-FOXA2-2 707 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 259 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 533 bp overlap
ChIP DE DE-GATA4-2 637 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 559 bp overlap
ChIP DE DE-GATA6-2 751 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 580 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 510 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 272 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 504 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 492 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 204 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 225 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 457 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 289 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 246 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 204 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 257 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 125 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 616 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 324 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 259 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 642 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 453 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 502 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
ChIP hESC GSE20650.NANOG.hESC 151 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 282 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 230 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 167 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 429 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 251 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 253 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 687 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 533 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 882 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 200 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 195 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 204 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 619 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 344 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 251 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 256 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 281 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 404 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 284 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 371 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 152 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 440 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 661 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 454 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 317 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 528 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 419 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 343 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 177 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 175 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 217 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 605 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 528 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 435 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 485 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 568 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 488 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 737 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 164 bp overlap
ChIP hESC GSE69479.SOX2.hESC 184 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 387 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 209 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 161 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 481 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 183 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 435 bp overlap
TCF7 2 datasets
ChIP GM12878 ENCFF749DPM 365 bp overlap
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 140 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 273 bp overlap
TRIM28 2 datasets
ChIP WIBR3 GSE84382.TRIM28.WIBR3 172 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 270 bp overlap
USF1 2 datasets
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 175 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 272 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 252 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 151 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 292 bp overlap