chrX : 123,864,842 – 123,865,356
514 bp 63 TFs 3 linked genes
This 514 bp open chromatin element is linked to XIAP, STAG2, and THOC2 and is bound by 63 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
XIAP 5.0 kb Proximal Proximity
STAG2 95.6 kb Distal Multiome
THOC2 132.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:123,859,842 – 123,870,356
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 8 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 183 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 157 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 280 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 177 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 303 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 294 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 123 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 166 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 270 bp overlap
CDC5L 1 dataset
ChIP K562 ENCFF644OMA 103 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 323 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 236 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 426 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 347 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 288 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 289 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 134 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 381 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 269 bp overlap
FOXA1 2 datasets
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 107 bp overlap
ChIP prostate_tumor_tissue3 GSE114385.FOXA1.prostate_tumor_tissue3 330 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 274 bp overlap
ChIP DE DE-FOXA2-1 514 bp overlap
ChIP DE DE-FOXA2-2 514 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 151 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 182 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 236 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 194 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 226 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 238 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 514 bp overlap
ChIP DE DE-GATA4-2 514 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 378 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 373 bp overlap
GATA6 15 datasets
ChIP AGS GSE51705.GATA6.AGS 260 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 291 bp overlap
ChIP DE DE-GATA6-1 496 bp overlap
ChIP DE DE-GATA6-2 514 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 509 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 433 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 514 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 425 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 140 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 487 bp overlap
ChIP foregut GSE117136.GATA6.foregut 427 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 236 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 205 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 85 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 76 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 191 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 290 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 282 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 268 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR711SNW.NCOA1.K-562 220 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 231 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 272 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 170 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 306 bp overlap
NR1D1 1 dataset
Motif DE_48h DE_48h-NR1D1_MA1531.2 14 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 385 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 211 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP HepG2 ENCFF252NAR 231 bp overlap
ChIP HepG2 ENCFF252NAR 439 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 414 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCFF676PLV 64 bp overlap
ChIP HEK293 ENCFF676PLV 426 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 428 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 388 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 228 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 476 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 512 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 424 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 493 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 385 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 410 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 222 bp overlap
ZBTB33 2 datasets
ChIP K562 ENCFF427SDV 318 bp overlap
ChIP K562 ENCFF875HLX 324 bp overlap
ZNF135 1 dataset
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 269 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 144 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF615YYW 140 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 356 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 309 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 142 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 98 bp overlap
Zfp335 1 dataset
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap