chr2 : 27,654,817 – 27,655,565
748 bp 53 TFs 2 linked genes
This 748 bp open chromatin element is linked to SUPT7L and SLC4A1AP and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SUPT7L 8.1 kb Proximal Proximity
SLC4A1AP 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:27,649,817 – 27,660,565
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 117 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 141 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 287 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 175 bp overlap
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 219 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 224 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CREBBP 2 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 126 bp overlap
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 308 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 446 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 337 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 425 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 447 bp overlap
CTCF 17 datasets
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 152 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 88 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 176 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 165 bp overlap
ChIP PC-3 ENCFF487TUI 272 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 215 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 177 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 108 bp overlap
ChIP astrocyte ENCFF042YJV 190 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 89 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 172 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 95 bp overlap
ChIP endodermal cell ENCFF471YCZ 205 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 395 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 521 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 497 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 267 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 215 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 186 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE148277.ESR1.MCF-7 188 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 704 bp overlap
ChIP DE DE-FOXA2-2 593 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 745 bp overlap
ChIP DE DE-GATA4-2 748 bp overlap
ChIP foregut GSE117136.GATA4.foregut 575 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 748 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 370 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 423 bp overlap
ChIP foregut GSE117136.GATA6.foregut 456 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 203 bp overlap
ChIP liver ENCFF449HPV 214 bp overlap
ChIP liver ERP002306.HNF4A.liver 152 bp overlap
JUN 1 dataset
ChIP BT-549 GSE46166.JUN.BT-549 196 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 246 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 54 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 372 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 396 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 389 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 191 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 630 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 487 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 54 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 277 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 151 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 304 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 147 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 165 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 83 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 463 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 452 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 206 bp overlap
POLR2A 3 datasets
ChIP K562 ENCFF215CWW 677 bp overlap
ChIP spleen ENCFF706IUS 135 bp overlap
ChIP spleen ENCFF706IUS 338 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 354 bp overlap
RAD21 1 dataset
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 183 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 151 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 420 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 748 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 734 bp overlap
SMARCA4 11 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 121 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 90 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 334 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 384 bp overlap
ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 328 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 340 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 287 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 317 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 320 bp overlap
SMARCC1 5 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 280 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 224 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 269 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 263 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 269 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 163 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 181 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 235 bp overlap
STAT3 4 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 200 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 251 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 193 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 155 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 374 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 259 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 145 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
ChIP NPC GSE154479.TCF3.NPC 318 bp overlap
TGIF2 1 dataset
ChIP HepG2 ENCFF421ZJN 411 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 152 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 166 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 162 bp overlap