chrY : 2,885,346 – 2,885,656
310 bp 15 TFs 2 linked genes
This 310 bp open chromatin element is linked to HSFY3P and ENSG00000290841 and is bound by 15 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HSFY3P 1.7 kb Proximal Proximity
ENSG00000290841 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrY:2,880,346 – 2,890,656
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 81 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 310 bp overlap
ChIP DE DE-GATA4-2 310 bp overlap
ChIP foregut GSE117136.GATA4.foregut 310 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 310 bp overlap
ChIP DE DE-GATA6-2 310 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 310 bp overlap
ChIP foregut GSE117136.GATA6.foregut 290 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 92 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 134 bp overlap
HNF4G 1 dataset
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 117 bp overlap
NANOG 3 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 184 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 61 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 220 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 263 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 305 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 133 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 310 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 310 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 146 bp overlap