chr2 : 44,881,511 – 44,882,032
521 bp 68 TFs 2 linked genes
This 521 bp open chromatin element is linked to LINC01833 and SIX3 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01833 54.0 kb Distal Multiome
SIX3 59.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:44,876,511 – 44,887,032
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K-562 ENCSR440VKE.ADNP.K-562 195 bp overlap
ChIP K562 ENCFF492SKF 371 bp overlap
ASCL1 1 dataset
Motif DE_72h DE_72h-ASCL1_MA1100.3 8 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 224 bp overlap
ChIP K562 ENCFF343XWA 108 bp overlap
BRD4 1 dataset
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 185 bp overlap
CEBPD 1 dataset
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
CTCF 1 dataset
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 143 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 140 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 239 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 92 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 251 bp overlap
Elf5 1 dataset
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
FOXA1 1 dataset
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 168 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 174 bp overlap
ChIP DE DE-FOXA2-1 521 bp overlap
ChIP DE DE-FOXA2-2 521 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 195 bp overlap
FOXF2 1 dataset
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXH1 1 dataset
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj3 1 dataset
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
Foxn1 1 dataset
Motif DE_72h DE_72h-Foxn1_MA1684.1 6 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GATA2 2 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP SK-N-SH ENCFF764OZD 391 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 464 bp overlap
ChIP DE DE-GATA4-2 521 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 465 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 276 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 440 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 199 bp overlap
ChIP DE DE-GATA6-1 519 bp overlap
ChIP DE DE-GATA6-2 521 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 342 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 521 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 426 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 521 bp overlap
ChIP foregut GSE117136.GATA6.foregut 309 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 352 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 329 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 138 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 173 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
KDM1A 7 datasets
ChIP H1 ENCFF696SGD 219 bp overlap
ChIP HepG2 ENCFF240UWG 381 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 155 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 61 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 109 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 212 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 240 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 154 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 322 bp overlap
MNT 1 dataset
ChIP HepG2 ENCFF701PYP 385 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 170 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 208 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP hiPSC_HUES9 GSE106870.RAD21.hiPSC_HUES9 136 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 223 bp overlap
ChIP K562 ENCFF248CGR 97 bp overlap
ChIP K562 ENCFF957ORK 97 bp overlap
RELB 1 dataset
Motif DE_72h DE_72h-RELB_MA1117.2 7 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 521 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 494 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 377 bp overlap
SMARCA5 3 datasets
ChIP GM12878 ENCFF327LDR 239 bp overlap
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 113 bp overlap
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 131 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 521 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 424 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZFP36 5 datasets
ChIP A-549 ENCSR294JWV.ZFP36.A-549 119 bp overlap
ChIP A549 ENCFF505LUC 59 bp overlap
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 70 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 118 bp overlap
ChIP K562 ENCFF255RZG 130 bp overlap
ZMYM3 5 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 131 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 84 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 167 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 157 bp overlap
ChIP K562 ENCFF361LXT 157 bp overlap
ZNF530 1 dataset
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF768 2 datasets
ChIP HEK293 ENCSR070HWF.ZNF768.HEK293 86 bp overlap
ChIP HepG2 ENCFF388QCK 197 bp overlap