chr2 : 47,019,690 – 47,020,313
623 bp 52 TFs 3 linked genes
This 623 bp open chromatin element is linked to TTC7A, MCFD2, and CALM2 and is bound by 52 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TTC7A 104.2 kb Distal Multiome
MCFD2 104.2 kb Distal Multiome
CALM2 156.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:47,014,690 – 47,025,313
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP MM1-S GSE43743.BRD3.MM1-S 345 bp overlap
BRD4 11 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 245 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 140 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 86 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 623 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 623 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 623 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 599 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 412 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 623 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 623 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 341 bp overlap
Bcl11B 1 dataset
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CDK8 1 dataset
ChIP MM1-S GSE43743.CDK8.MM1-S 522 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 451 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 156 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 256 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 370 bp overlap
CTCF 1 dataset
ChIP MM1-S GSE43743.CTCF.MM1-S 338 bp overlap
DNMT3B 2 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 159 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 211 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 236 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 182 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 570 bp overlap
ChIP DE DE-FOXA2-2 488 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 501 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 472 bp overlap
ChIP DE DE-GATA6-2 463 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 356 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 294 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 299 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 422 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 485 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 245 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 523 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 379 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 291 bp overlap
KLF9 1 dataset
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 134 bp overlap
MAX 3 datasets
ChIP K562 ENCFF524IJO 189 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 436 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 362 bp overlap
MED1 8 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 217 bp overlap
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 449 bp overlap
ChIP MM1-S_DMSO GSE36354.MED1.MM1-S_DMSO 312 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 623 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 350 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 386 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 590 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 623 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 192 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 457 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 494 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 501 bp overlap
MYC 6 datasets
ChIP BL41 GSE30726.MYC.BL41 127 bp overlap
ChIP BL41 GSE30726.MYC.BL41 92 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 595 bp overlap
ChIP MM1-S_JQ1 GSE42161.MYC.MM1-S_JQ1 169 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 369 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 374 bp overlap
MYCN 4 datasets
ChIP BE2C GSE80151.MYCN.BE2C 105 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 61 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 169 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 105 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 306 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 148 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 257 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 254 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 199 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 365 bp overlap
OSR1 1 dataset
Motif DE_48h DE_48h-OSR1_MA1542.2 8 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 266 bp overlap
RFX1 1 dataset
Motif DE_48h DE_48h-RFX1_MA0509.3 16 bp overlap
RUNX2 1 dataset
Motif DE_48h DE_48h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 358 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 174 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 539 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 331 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 273 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 303 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 120 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 105 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 127 bp overlap
ZBTB12 1 dataset
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 313 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 297 bp overlap