chr2 : 47,727,846 – 47,728,468
622 bp 46 TFs 3 linked genes
This 622 bp open chromatin element is linked to MSH6, KCNK12, and FBXO11 and is bound by 46 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MSH6 55.0 kb Distal Multiome
KCNK12 157.2 kb Distal Multiome
FBXO11 178.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:47,722,846 – 47,733,468
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 193 bp overlap
CEBPB 2 datasets
ChIP A549 ENCFF235AIY 55 bp overlap
ChIP HepG2 ENCFF536NTI 52 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 235 bp overlap
EHF 1 dataset
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
ELF2 1 dataset
Motif DE_48h DE_48h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
ELF4 1 dataset
Motif DE_48h DE_48h-ELF4_MA0641.1 12 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ESR2 2 datasets
Motif DE_36h DE_36h-ESR2_MA0258.2 15 bp overlap
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
ETV1 1 dataset
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FIGLA 2 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 278 bp overlap
ChIP DE DE-FOXA2-2 299 bp overlap
FOXN3 2 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GABPA 1 dataset
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 622 bp overlap
ChIP DE DE-GATA4-2 622 bp overlap
ChIP foregut GSE117136.GATA4.foregut 342 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 577 bp overlap
ChIP DE DE-GATA6-2 622 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 434 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 409 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 423 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 606 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 416 bp overlap
ChIP foregut GSE117136.GATA6.foregut 261 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 493 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 2 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Mecom 1 dataset
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
PAX5 1 dataset
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 267 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
RFX1 2 datasets
ChIP K562 ENCFF421AVO 162 bp overlap
ChIP K562 ENCFF809XVG 321 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 330 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 470 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap
SNAI2 2 datasets
Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 346 bp overlap
Six3 1 dataset
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
Stat5b 1 dataset
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Stat6 1 dataset
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
YY1 1 dataset
ChIP GM12892 ENCFF802MHJ 283 bp overlap
Yy1 1 dataset
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZEB1 2 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF135 1 dataset
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF175 1 dataset
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap