chr2 : 58,038,059 – 58,038,687
628 bp 13 TFs 2 linked genes
This 628 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287875 8.0 kb Proximal Proximity
VRK2 8.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,033,059 – 58,043,687
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 136 bp overlap
CHAMP1 2 datasets
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 159 bp overlap
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 130 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 121 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 628 bp overlap
ChIP DE DE-FOXA2-2 513 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 628 bp overlap
ChIP DE DE-GATA4-2 628 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 180 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 628 bp overlap
ChIP DE DE-GATA6-2 628 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 545 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 628 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 626 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 268 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 56 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 77 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 77 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 113 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 113 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 195 bp overlap
ZNF211 2 datasets
ChIP HEK293 ENCFF839HGM 198 bp overlap
ChIP HEK293 ENCSR365DQH.ZNF211.HEK293 216 bp overlap