chr2 : 58,040,625 – 58,040,829
204 bp 12 TFs 2 linked genes
This 204 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287875 5.9 kb Proximal Proximity
VRK2 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,035,625 – 58,045,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 189 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 56 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 183 bp overlap
ChIP DE DE-FOXA2-1 204 bp overlap
ChIP DE DE-FOXA2-2 204 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 204 bp overlap
ChIP DE DE-GATA4-2 204 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 116 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 204 bp overlap
ChIP DE DE-GATA6-2 204 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 204 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 204 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 113 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 204 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 204 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 168 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 112 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 196 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 156 bp overlap