chr2 : 58,041,707 – 58,042,131
424 bp 13 TFs 2 linked genes
This 424 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287875 4.6 kb Proximal Proximity
VRK2 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,036,707 – 58,047,131
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 136 bp overlap
CTCF 1 dataset
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 417 bp overlap
ChIP DE DE-FOXA2-2 245 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 424 bp overlap
ChIP DE DE-GATA4-2 424 bp overlap
ChIP foregut GSE117136.GATA4.foregut 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 253 bp overlap
GATA6 6 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 127 bp overlap
ChIP DE DE-GATA6-1 424 bp overlap
ChIP DE DE-GATA6-2 424 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 350 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 318 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 269 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 121 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 177 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 297 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 227 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 199 bp overlap