chr2 : 58,044,681 – 58,045,380
699 bp 46 TFs 2 linked genes
This 699 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287875 1.3 kb Proximal Proximity
VRK2 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,039,681 – 58,050,380
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 225 bp overlap
ChIP breast_tumor_Male_30 GSE104399.AR.breast_tumor_Male_30 51 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 91 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 668 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 351 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 159 bp overlap
BRD4 3 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 57 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 67 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 343 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 270 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 169 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_1 GSE104399.FOXA1.breast_tumor_Male_1 145 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 196 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 65 bp overlap
ChIP DE DE-FOXA2-1 347 bp overlap
ChIP DE DE-FOXA2-2 280 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR302AWT.FOXK2.K-562 313 bp overlap
ChIP K-562 ENCSR508DQA.FOXK2.K-562 106 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 560 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 392 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 229 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 346 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 320 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 298 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF616FJX 418 bp overlap
ChIP GM12878 ENCFF616FJX 571 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 153 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 473 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 219 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 151 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 247 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 136 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 223 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 308 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 289 bp overlap
NBN 3 datasets
ChIP GM12878 ENCSR278SQL.NBN.GM12878 266 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 309 bp overlap
ChIP K-562 ENCSR085QEV.NBN.K-562 285 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 198 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 300 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 178 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 204 bp overlap
PBX3 2 datasets
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 162 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 271 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 261 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 225 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 305 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 276 bp overlap
POLR2A 3 datasets
ChIP GM12892 ENCFF245LYF 545 bp overlap
ChIP GM12892 ENCFF245LYF 353 bp overlap
ChIP GM19099 ENCFF726IBN 452 bp overlap
SMYD3 1 dataset
ChIP HepG2 ENCFF612TNJ 495 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 244 bp overlap
SPI1 4 datasets
ChIP EM-3 GSE128834.SPI1.EM-3 129 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 89 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 84 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 121 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 415 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF501CDP 52 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap