chr2 : 63,572,050 – 63,572,620
570 bp 43 TFs 3 linked genes
This 570 bp open chromatin element is linked to WDPCP, MDH1, and UGP2 and is bound by 43 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
WDPCP 16.0 kb Distal Multiome
MDH1 16.7 kb Distal Multiome
UGP2 268.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:63,567,050 – 63,577,620
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 139 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Dux 2 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 372 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 271 bp overlap
ChIP DE DE-FOXA2-1 539 bp overlap
ChIP DE DE-FOXA2-2 519 bp overlap
FOXC2 1 dataset
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
FOXH1 2 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
GATA1 6 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 169 bp overlap
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA1::TAL1 4 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
ChIP TF1 GSE73207.GATA2.TF1 235 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 312 bp overlap
GATA3 1 dataset
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 138 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 570 bp overlap
ChIP DE DE-GATA4-2 570 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 347 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 570 bp overlap
ChIP DE DE-GATA6-2 570 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 426 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 467 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 442 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 483 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 474 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 453 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 488 bp overlap
ChIP foregut GSE117136.GATA6.foregut 293 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 404 bp overlap
MYF6 1 dataset
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
NFYA 2 datasets
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYB 2 datasets
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
NFYC 2 datasets
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
PHOX2B 2 datasets
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 345 bp overlap
PROP1 2 datasets
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 287 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 565 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 376 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 424 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 360 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 451 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 501 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 306 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 287 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 311 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 570 bp overlap
SOX18 1 dataset
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
SOX9 1 dataset
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
SRY 1 dataset
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
TAL1 1 dataset
ChIP ProEs GSE59087.TAL1.ProEs 133 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 102 bp overlap
ZNF282 1 dataset
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
ZNF416 1 dataset
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 61 bp overlap
ZNF768 1 dataset
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap