chr2 : 69,348,684 – 69,349,416
732 bp 41 TFs 3 linked genes
This 732 bp open chromatin element is linked to GFPT1, NFU1, and AAK1 and is bound by 41 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GFPT1 38.2 kb Distal Multiome
NFU1 88.4 kb Distal Multiome
AAK1 294.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:69,343,684 – 69,354,416
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 278 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 428 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 400 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 323 bp overlap
ERF::FOXO1 2 datasets
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_72h DE_72h-ERFFOXO1_MA1936.2 12 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA1 2 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 126 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 426 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 363 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 272 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 315 bp overlap
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 679 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 483 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 575 bp overlap
ChIP DE DE-GATA4-2 677 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 461 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 732 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 582 bp overlap
ChIP DE DE-GATA6-2 732 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 349 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 364 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 395 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 275 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 590 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 457 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 162 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MTF1 2 datasets
Motif DE_60h DE_60h-MTF1_MA0863.1 14 bp overlap
Motif DE_72h DE_72h-MTF1_MA0863.1 14 bp overlap
Mafg 1 dataset
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 251 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 170 bp overlap
NKX2-2 2 datasets
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
PBX3 1 dataset
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 146 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 254 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 457 bp overlap
POU2F3 2 datasets
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
RBM22 5 datasets
ChIP HepG2 ENCFF292RVQ 117 bp overlap
ChIP HepG2 ENCFF561IAJ 123 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 160 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 117 bp overlap
ChIP K562 ENCFF420JDS 132 bp overlap
RXRA::VDR 2 datasets
Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap
SCRT1 2 datasets
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
Motif DE_72h DE_72h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 513 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 184 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 550 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 359 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT6 1 dataset
ChIP HepG2 ENCFF370LZV 351 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
ZNF24 2 datasets
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF263 2 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF324 2 datasets
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZZZ3 1 dataset
ChIP K-562 ENCSR780BBJ.ZZZ3.K-562 490 bp overlap