chr2 : 71,002,259 – 71,002,506
247 bp 98 TFs 3 linked genes
This 247 bp open chromatin element is linked to TEX261, ENSG00000258881, and ENSG00000228384 and is bound by 98 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TEX261 7.4 kb Proximal Proximity
ENSG00000258881 7.5 kb Proximal Proximity
ENSG00000228384 7.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:70,997,259 – 71,007,506
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 137 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 154 bp overlap
ATF4 1 dataset
ChIP HepG2 ENCFF903ADR 247 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 247 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 165 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 247 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 247 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 135 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 189 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 247 bp overlap
CTCF 7 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 195 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 171 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 98 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 227 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 247 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 88 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 109 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 218 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 247 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 105 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 145 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 216 bp overlap
ChIP neural cell ENCFF442QNK 247 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 129 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 136 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 247 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 72 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 151 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 178 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 204 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 247 bp overlap
HNF4A 6 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 208 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 160 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 125 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 116 bp overlap
ChIP HepG2 ENCFF146SSF 247 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 154 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 142 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 194 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 138 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 143 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 148 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 155 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 192 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 202 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 135 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 174 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 201 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 164 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 227 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 79 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 69 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 176 bp overlap
MNT 1 dataset
ChIP HepG2 ENCFF701PYP 205 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 165 bp overlap
MXI1 4 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 133 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 139 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 6 datasets
ChIP H1 ENCFF747ZPQ 176 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 148 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 247 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 247 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 144 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 235 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 122 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 232 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 163 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 247 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 247 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 156 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 247 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 191 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 64 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 247 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 172 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 230 bp overlap
ChIP neural cell ENCFF882LXX 240 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 226 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 247 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 247 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 247 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 170 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 157 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 211 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 179 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 228 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 200 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 247 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 205 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 185 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 117 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 168 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 148 bp overlap
SRF 2 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 175 bp overlap
ChIP K562 ENCFF766EOO 247 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 123 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 216 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 5 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 136 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 210 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 247 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 247 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFAP4 1 dataset
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 144 bp overlap
TP53 2 datasets
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
Motif ES_0h ES_0h-TP53_MA0106.3 18 bp overlap
TP63 5 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 123 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 149 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 126 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 158 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 148 bp overlap
TP73 2 datasets
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 127 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 74 bp overlap
ZNF276 1 dataset
ChIP HepG2 ENCFF431WQQ 247 bp overlap
ZNF292 1 dataset
ChIP HepG2 ENCFF975MAJ 247 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 108 bp overlap
ZSCAN4 4 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
ChIP HEK293 ENCFF381BKT 192 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 247 bp overlap