chr1 : 34,749,736 – 34,750,608
872 bp 52 TFs 6 linked genes
This 872 bp open chromatin element is linked to 6 target genes and is bound by 52 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GJB4 9.1 kb Proximal Proximity
GJA4 42.9 kb Distal Multiome
SMIM12 109.6 kb Distal Multiome
TMEM35B 235.2 kb Distal Multiome
ZMYM6 281.8 kb Distal Multiome
CSMD2 584.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:34,744,736 – 34,755,608
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 181 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 265 bp overlap
ChIP BLaER1 ENCFF460KDD 476 bp overlap
DUX4 2 datasets
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 56 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 232 bp overlap
ChIP hESC GSE26097.EOMES.hESC 142 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 173 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 173 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 772 bp overlap
ChIP DE DE-FOXA2-2 790 bp overlap
FOXH1 2 datasets
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
GATA2 3 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 232 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 150 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 872 bp overlap
ChIP DE DE-GATA4-2 820 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 534 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 467 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 446 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 780 bp overlap
ChIP DE DE-GATA6-2 867 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 282 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 387 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 502 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 513 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 760 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 503 bp overlap
ChIP foregut GSE117136.GATA6.foregut 511 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 538 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 432 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
JDP2 1 dataset
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 407 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 703 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 574 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 641 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 66 bp overlap
MYB 2 datasets
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 184 bp overlap
NFE2 1 dataset
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
NFYA 2 datasets
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYB 3 datasets
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 188 bp overlap
NFYC 2 datasets
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NKX2-2 1 dataset
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
PBX1 1 dataset
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 398 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 271 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 392 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 107 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 437 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 267 bp overlap
Plagl1 1 dataset
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RARA 1 dataset
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 88 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 260 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 480 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 867 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 558 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 579 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 510 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 487 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 535 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 535 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 174 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 586 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 745 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 143 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
VENTX 1 dataset
Motif DE_72h DE_72h-VENTX_MA0724.1 9 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 228 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap