chr1 : 35,554,954 – 35,555,177
223 bp 47 TFs 2 linked genes
This 223 bp open chromatin element is linked to KIAA0319L and NCDN and is bound by 47 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KIAA0319L at TSS At TSS Proximity
NCDN 2.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:35,549,954 – 35,560,177
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 223 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 223 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 223 bp overlap
ChIP H1 ENCFF399KAM 223 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 223 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 202 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 221 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 223 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 211 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 162 bp overlap
ChIP H1 ENCFF955PMP 218 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 149 bp overlap
CREB3L4 2 datasets
Motif DE_12h DE_12h-CREB3L4_MA1475.2 9 bp overlap
Motif DE_24h DE_24h-CREB3L4_MA1475.2 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 156 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1143.2 9 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 223 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 148 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 223 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GMEB2 2 datasets
Motif DE_12h DE_12h-GMEB2_MA0862.1 8 bp overlap
Motif DE_24h DE_24h-GMEB2_MA0862.1 8 bp overlap
JDP2 2 datasets
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
Motif DE_24h DE_24h-JDP2_MA0656.2 10 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 223 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 223 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 223 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 181 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 223 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 223 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 223 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 223 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 218 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 153 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 115 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 131 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 76 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 223 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 223 bp overlap
ChIP hESC GSE18292.NANOG.hESC 109 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 216 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 223 bp overlap
ChIP H1 ENCFF566JSR 223 bp overlap
ChIP H1 ENCFF770YBQ 223 bp overlap
ChIP H1 ENCFF770YBQ 223 bp overlap
POU5F1 14 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 181 bp overlap
ChIP GM23338 ENCFF333SNB 223 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 223 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 223 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 223 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 136 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 223 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 197 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 222 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 223 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 223 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 223 bp overlap
RAD21 1 dataset
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 71 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SCRT1 2 datasets
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
Motif DE_24h DE_24h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 223 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 100 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 190 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 134 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 217 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 223 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 223 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 223 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 223 bp overlap
SOX2 4 datasets
ChIP OSKM GSE81899.SOX2.OSKM 149 bp overlap
ChIP hESC GSE69479.SOX2.hESC 209 bp overlap
ChIP hESC GSE18292.SOX2.hESC 113 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 223 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap
ChIP WTC11 ENCFF688PEU 223 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 223 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 214 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 223 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 223 bp overlap
ChIP hESC GSE122298.TBP.hESC 223 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 67 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 223 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 177 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 223 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 223 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 117 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap