chr2 : 96,539,488 – 96,539,838
350 bp 20 TFs 2 linked genes
This 350 bp open chromatin element is linked to ARID5A and ENSG00000235480 and is bound by 20 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARID5A 2.7 kb Proximal Proximity
ENSG00000235480 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:96,534,488 – 96,544,838
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 164 bp overlap
BRD4 2 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 156 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 199 bp overlap
ESR1 1 dataset
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 103 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 295 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
GATA2 3 datasets
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 151 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 350 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 131 bp overlap
GATA3 4 datasets
ChIP Jurkat GSE29180.GATA3.Jurkat 206 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 139 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 221 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 220 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 328 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 196 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 59 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 255 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 200 bp overlap
POLR2A 2 datasets
ChIP GM12878 ENCFF412KAE 350 bp overlap
ChIP GM12878 ENCFF412KAE 350 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 288 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 153 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 320 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 295 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 80 bp overlap
SUZ12 1 dataset
ChIP NT2/D1 ENCFF574SXS 62 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 243 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 116 bp overlap