chr2 : 112,848,882 – 112,849,414
532 bp 76 TFs 3 linked genes
This 532 bp open chromatin element is linked to CKAP2L, SLC20A1, and CHCHD5 and is bound by 76 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CKAP2L 84.5 kb Distal Multiome
SLC20A1 203.2 kb Distal Multiome
CHCHD5 264.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:112,843,882 – 112,854,414
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 253 bp overlap
BCL6 1 dataset
Motif DE_48h DE_48h-BCL6_MA0463.3 13 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 224 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 532 bp overlap
ChIP DE DE-FOXA2-2 495 bp overlap
FOXD3 1 dataset
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 532 bp overlap
ChIP DE DE-GATA4-2 532 bp overlap
ChIP foregut GSE117136.GATA4.foregut 368 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 532 bp overlap
ChIP DE DE-GATA6-2 532 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 359 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 382 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 532 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 434 bp overlap
ChIP foregut GSE117136.GATA6.foregut 402 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 315 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 409 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 532 bp overlap
GLIS2 4 datasets
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap
Motif DE_60h DE_60h-GLIS2_MA0736.1 14 bp overlap
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
GLIS3 5 datasets
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
Motif DE_60h DE_60h-GLIS3_MA0737.1 14 bp overlap
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 245 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 133 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
IRF3 1 dataset
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
KLF17 4 datasets
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
Motif DE_72h DE_72h-KLF17_MA1514.2 14 bp overlap
Lhx3 1 dataset
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
MYOD1 1 dataset
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 375 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 210 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 532 bp overlap
NFATC3 1 dataset
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NFIA 4 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIC::TLX1 4 datasets
Motif DE_36h DE_36h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_48h DE_48h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_72h DE_72h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 4 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
Nanog 1 dataset
Motif DE_48h DE_48h-Nanog_MA2339.1 7 bp overlap
Nfat5 1 dataset
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 1 dataset
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Olig2 1 dataset
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PBX2 1 dataset
Motif DE_48h DE_48h-PBX2_MA1113.3 9 bp overlap
POU2F3 1 dataset
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
POU4F1 1 dataset
Motif DE_48h DE_48h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_48h DE_48h-POU4F3_MA0791.2 12 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 373 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 103 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RFX7 2 datasets
Motif DE_48h DE_48h-RFX7_MA1554.2 8 bp overlap
Motif DE_72h DE_72h-RFX7_MA1554.2 8 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 510 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 247 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 321 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 532 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 532 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 177 bp overlap
SNAI2 1 dataset
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 478 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 502 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBX19 1 dataset
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
Tcf12 1 dataset
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 147 bp overlap
VEZF1 4 datasets
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap
ZBTB7C 5 datasets
Motif DE_36h DE_36h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_72h DE_72h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZIC1 4 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 532 bp overlap
ZIC4 4 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 4 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF184 1 dataset
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF281 4 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF320 5 datasets
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF549 1 dataset
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
ZNF667 4 datasets
Motif DE_36h DE_36h-ZNF667_MA1984.2 11 bp overlap
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF701 4 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF740 4 datasets
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap
ZNF75D 4 datasets
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
ZNF8 1 dataset
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap