chr1 : 46,788,642 – 46,789,579
937 bp 28 TFs 3 linked genes
This 937 bp open chromatin element is linked to EFCAB14, ATPAF1, and MKNK1 and is bound by 28 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EFCAB14 69.9 kb Distal Multiome
ATPAF1 120.6 kb Distal Multiome
MKNK1 172.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:46,783,642 – 46,794,579
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 19 datasets
ChIP LNCaP GSE85558.AR.LNCaP 158 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 174 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 139 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 206 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 137 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 178 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 148 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 271 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 369 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 390 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 521 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 201 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 121 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 216 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 247 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 395 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 238 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 247 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 326 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 260 bp overlap
ChIP K562 ENCFF673OEZ 234 bp overlap
FOXA1 10 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 332 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 178 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 333 bp overlap
ChIP HepG2 ENCFF207NVJ 198 bp overlap
ChIP HepG2 ENCFF361KNY 244 bp overlap
ChIP HepG2 ENCFF740VZW 193 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 155 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 195 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 200 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 221 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 165 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 329 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 133 bp overlap
ChIP DE DE-FOXA2-1 918 bp overlap
ChIP DE DE-FOXA2-2 879 bp overlap
ChIP HepG2 ENCFF533COJ 129 bp overlap
ChIP HepG2 ENCFF570ABM 282 bp overlap
ChIP HepG2 ENCFF894AYY 166 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 285 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 912 bp overlap
ChIP DE DE-GATA4-2 937 bp overlap
ChIP foregut GSE117136.GATA4.foregut 732 bp overlap
ChIP foregut GSE117136.GATA4.foregut 68 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 852 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 303 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 883 bp overlap
ChIP DE DE-GATA6-2 937 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 910 bp overlap
ChIP foregut GSE117136.GATA6.foregut 748 bp overlap
ChIP foregut GSE117136.GATA6.foregut 83 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 261 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 185 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 301 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 210 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 82 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 111 bp overlap
PGR 4 datasets
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 254 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 181 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 163 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 235 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 315 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 227 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 64 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 340 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 237 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 873 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 158 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 505 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 819 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 304 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 380 bp overlap
TAL1 1 dataset
ChIP K562 ENCFF620GMX 385 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 381 bp overlap
TP63 5 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 87 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 103 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 325 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 99 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 179 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap