chr1 : 47,523,548 – 47,524,329
781 bp 53 TFs 2 linked genes
This 781 bp open chromatin element is linked to CMPK1 and STIL and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CMPK1 190.3 kb Distal Multiome
STIL 209.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:47,518,548 – 47,529,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 131 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 133 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 781 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 272 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 674 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 781 bp overlap
BRD4 4 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 557 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 495 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 781 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 622 bp overlap
CTCF 6 datasets
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 120 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 169 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 177 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 153 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 68 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 518 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 305 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 317 bp overlap
FERD3L 1 dataset
Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 357 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 457 bp overlap
ChIP DE DE-FOXA2-2 781 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 492 bp overlap
ChIP DE DE-GATA4-2 619 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 328 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 388 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 443 bp overlap
ChIP DE DE-GATA6-2 590 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 553 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 565 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 691 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 552 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 701 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 723 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 542 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 310 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 107 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 299 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 297 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 459 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 131 bp overlap
KDM1A 1 dataset
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 186 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 259 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 384 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 572 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 302 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 228 bp overlap
NKX2-1 2 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 54 bp overlap
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 218 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 201 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 294 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 325 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 299 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 320 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 350 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 316 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 191 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 458 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 446 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 147 bp overlap
RAD21 8 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 130 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 135 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 266 bp overlap
ChIP liver ENCFF485PAC 457 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 202 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 112 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 112 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 230 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 366 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 762 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 684 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 602 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 675 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 603 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 635 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 672 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 174 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 428 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 298 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 491 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 176 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 525 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 781 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 248 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 268 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 165 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 162 bp overlap
ZBTB33 1 dataset
ChIP liver ENCFF592BJA 53 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 61 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 146 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 228 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 216 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 118 bp overlap