chr1 : 50,027,892 – 50,028,178
286 bp 13 TFs 2 linked genes
This 286 bp open chromatin element is linked to ELAVL4 and AGBL4 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ELAVL4 3.9 kb Proximal Proximity
AGBL4 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,022,892 – 50,033,178
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 168 bp overlap
ChIP VCaP GSE148358.AR.VCaP 138 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 104 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 221 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 286 bp overlap
ChIP DE DE-FOXA2-2 286 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 143 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 143 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 191 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 188 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 148 bp overlap
GATA3 1 dataset
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 118 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 286 bp overlap
ChIP DE DE-GATA4-2 286 bp overlap
ChIP foregut GSE117136.GATA4.foregut 286 bp overlap
GATA6 9 datasets
ChIP AGS GSE51705.GATA6.AGS 144 bp overlap
ChIP DE DE-GATA6-1 286 bp overlap
ChIP DE DE-GATA6-2 286 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 286 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 286 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 286 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 214 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 115 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 243 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 260 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 214 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 276 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 239 bp overlap