chr2 : 233,139,260 – 233,139,740
480 bp 98 TFs 3 linked genes
This 480 bp open chromatin element is linked to ATG16L1, DGKD, and SNORC and is bound by 98 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATG16L1 112.3 kb Distal Multiome
DGKD 215.1 kb Distal Multiome
SNORC 262.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:233,134,260 – 233,144,740
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 271 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 423 bp overlap
BCOR 6 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 145 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 166 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 267 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 152 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 168 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 165 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 66 bp overlap
BORCS8,MEF2B 1 dataset
ChIP HepG2 ENCFF255VGS 94 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 155 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 117 bp overlap
BRD4 3 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 292 bp overlap
ChIP hESC GSE33281.BRD4.hESC 84 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 480 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 76 bp overlap
CEBPB 1 dataset
ChIP H1 ENCFF871PTR 180 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 210 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 225 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 207 bp overlap
CTCF 4 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 73 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 191 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 95 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 87 bp overlap
EP300 1 dataset
ChIP HCT-116_Nutlin3a GSE125927.EP300.HCT-116_Nutlin3a 164 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 71 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 345 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 202 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 363 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 278 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 193 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 143 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 238 bp overlap
HIC2 1 dataset
ChIP HepG2 ENCFF927POV 234 bp overlap
HNF4A 3 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 331 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 157 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 144 bp overlap
HNF4G 1 dataset
ChIP HepG2 ENCFF323ATZ 149 bp overlap
HNRNPL 3 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 175 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 175 bp overlap
ChIP HepG2 ENCFF684GAM 293 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 245 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 325 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 319 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 234 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 480 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 201 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF507HCX 301 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 55 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF038CCB 217 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 153 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 62 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 166 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 480 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 302 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 277 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 381 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 382 bp overlap
ChIP hESC GSE20650.NANOG.hESC 294 bp overlap
ChIP hESC GSE18292.NANOG.hESC 156 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 365 bp overlap
ChIP H1 ENCFF566JSR 277 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 385 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 169 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 169 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 437 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 480 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 304 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 441 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 113 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 231 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 372 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 389 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 308 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 312 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 163 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 293 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 343 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 268 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 206 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 447 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 162 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 174 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 311 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 183 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 319 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 369 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 305 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 353 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 254 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 264 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 161 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 58 bp overlap
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 137 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 199 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 156 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 206 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 276 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 378 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 360 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 310 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 400 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 479 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 344 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 480 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 145 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF231PAK 341 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 321 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 202 bp overlap
ChIP HepG2 ENCFF767OCK 360 bp overlap
ChIP HepG2 ENCFF767OCK 376 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 98 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 285 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 218 bp overlap
STAT3 3 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 122 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 93 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 136 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 404 bp overlap
ChIP H1 ENCFF478SZO 230 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 177 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 87 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 140 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 120 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 154 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 152 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 320 bp overlap
TCF7L2 1 dataset
ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 117 bp overlap
TP53 45 datasets
ChIP BC-3_NUT ERP014035.TP53.BC-3_NUT 123 bp overlap
ChIP GM00011 GSE55727.TP53.GM00011 313 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 233 bp overlap
ChIP H9_IFI16 GSE142050.TP53.H9_IFI16 480 bp overlap
ChIP H9_ectoderm_IFI16 GSE142050.TP53.H9_ectoderm_IFI16 407 bp overlap
ChIP H9_mesoderm_IFI16 GSE142050.TP53.H9_mesoderm_IFI16 253 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 368 bp overlap
ChIP HCT-116_5FU GSE125927.TP53.HCT-116_5FU 263 bp overlap
ChIP HCT-116_Negative-ctrl GSE113338.TP53.HCT-116_Negative-ctrl 183 bp overlap
ChIP HCT-116_Nutlin3a GSE125927.TP53.HCT-116_Nutlin3a 445 bp overlap
ChIP HCT-116_Nutlin3a-SC GSE125927.TP53.HCT-116_Nutlin3a-SC 397 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 397 bp overlap
ChIP HCT-116_si-iASSP GSE113338.TP53.HCT-116_si-iASSP 368 bp overlap
ChIP HCT-116_siGLIS2-1-5FU GSE125927.TP53.HCT-116_siGLIS2-1-5FU 318 bp overlap
ChIP HepG2 ENCFF687JDU 232 bp overlap
ChIP IMR-90 GSE115940.TP53.IMR-90 184 bp overlap
ChIP IMR-90_NUT3A GSE58740.TP53.IMR-90_NUT3A 432 bp overlap
ChIP K-562_Daunorubicin GSE131484.TP53.K-562_Daunorubicin 208 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 462 bp overlap
ChIP MCF-7_1h_IR_10Gy GSE100099.TP53.MCF-7_1h_IR_10Gy 245 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 243 bp overlap
ChIP MCF-7_4h_IR_10Gy GSE100099.TP53.MCF-7_4h_IR_10Gy 444 bp overlap
ChIP MCF-7_7-5h_IR_10Gy GSE100099.TP53.MCF-7_7-5h_IR_10Gy 376 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 411 bp overlap
ChIP MCF-7_NCS-treated GSE101737.TP53.MCF-7_NCS-treated 319 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 480 bp overlap
ChIP SJSA-1 GSE86164.TP53.SJSA-1 175 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 375 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 392 bp overlap
ChIP U2OS_DMSO GSE46641.TP53.U2OS_DMSO 458 bp overlap
ChIP U2OS_DXR GSE46641.TP53.U2OS_DXR 298 bp overlap
ChIP U2OS_ETO GSE21939.TP53.U2OS_ETO 156 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 455 bp overlap
ChIP U2OS_UV_16H ERP004176.TP53.U2OS_UV_16H 120 bp overlap
ChIP U2OS_UV_8H ERP004176.TP53.U2OS_UV_8H 120 bp overlap
ChIP UO-31_2h_4GY GSE100292.TP53.UO-31_2h_4GY 89 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 465 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 211 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 243 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 461 bp overlap
ChIP lymphocyte_104_Nutlin GSE110368.TP53.lymphocyte_104_Nutlin 164 bp overlap
ChIP lymphocyte_116_DXR GSE110368.TP53.lymphocyte_116_DXR 196 bp overlap
ChIP lymphocyte_116_Nutlin GSE110368.TP53.lymphocyte_116_Nutlin 459 bp overlap
ChIP lymphocyte_45_DXR GSE110368.TP53.lymphocyte_45_DXR 125 bp overlap
ChIP lymphocyte_90_Nutlin GSE110368.TP53.lymphocyte_90_Nutlin 355 bp overlap
TP63 21 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 456 bp overlap
ChIP EP156T GSE43111.TP63.EP156T 136 bp overlap
ChIP HCC95 GSE46837.TP63.HCC95 149 bp overlap
ChIP HaCaT_LacZ GSE60814.TP63.HaCaT_LacZ 173 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 279 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 292 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 240 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 181 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 220 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 465 bp overlap
ChIP TT GSE46837.TP63.TT 149 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 188 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 170 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 212 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 251 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 242 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 211 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 224 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 145 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 221 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 212 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 191 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 276 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
ZBTB38 2 datasets
ChIP HepG2 ENCFF875UQX 368 bp overlap
ChIP HepG2 ENCFF875UQX 314 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 401 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 70 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 418 bp overlap
ZNF317 1 dataset
ChIP HepG2 ENCFF018ISP 306 bp overlap
ZNF430 1 dataset
ChIP HepG2 ENCFF967HQR 63 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 245 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 89 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 365 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 169 bp overlap
ChIP HepG2 ENCFF653WIX 169 bp overlap
ZNF7 1 dataset
ChIP HepG2 ENCFF983XQI 251 bp overlap
ZNF710 2 datasets
ChIP HepG2 ENCFF170JWO 480 bp overlap
ChIP HepG2 ENCFF170JWO 292 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 437 bp overlap
ZSCAN22 1 dataset
ChIP HepG2 ENCFF246MVE 207 bp overlap