chr1 : 52,396,940 – 52,397,252
312 bp 16 TFs 2 linked genes
This 312 bp open chromatin element is linked to ORC1 and PRPF38A and is bound by 16 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ORC1 7.2 kb Proximal Proximity
PRPF38A 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:52,391,940 – 52,402,252
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 160 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 161 bp overlap
CTCF 11 datasets
ChIP GM23338 ENCFF772DML 76 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 92 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 52 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 68 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 116 bp overlap
ChIP K562 ENCFF082GOI 62 bp overlap
ChIP Loucy ENCFF359TVQ 203 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 125 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 235 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 91 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 126 bp overlap
DNMT3B 2 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 196 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 178 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 312 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 168 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 206 bp overlap
JUNB 2 datasets
ChIP K-562 ENCSR000DJY.JUNB.K-562 138 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 312 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 167 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF137JSF 274 bp overlap
ChIP K562 ENCFF643HGX 262 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 191 bp overlap
ChIP HCT116 ENCFF568PEO 128 bp overlap
ChIP K562 ENCFF634XYR 225 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 57 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 68 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 258 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 267 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 312 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 159 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 159 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 77 bp overlap