chr1 : 53,442,378 – 53,442,615
237 bp 51 TFs 2 linked genes
This 237 bp open chromatin element is linked to ENSG00000293253 and SLC25A3P1 and is bound by 51 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000293253 2.4 kb Proximal Proximity
SLC25A3P1 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:53,437,378 – 53,447,615
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 177 bp overlap
BRD4 1 dataset
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 56 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 138 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 111 bp overlap
CEBPB 5 datasets
ChIP IMR-90 ENCFF468UGY 204 bp overlap
ChIP K562 ENCFF189VBN 209 bp overlap
ChIP K562 ENCFF584CTB 237 bp overlap
ChIP K562 ENCFF584CTB 237 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 220 bp overlap
CHD2 1 dataset
ChIP K562 ENCFF857WME 237 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 225 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 162 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 115 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 134 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 202 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 194 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 237 bp overlap
GATA2 4 datasets
ChIP K562 ENCFF830LLA 237 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 206 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 135 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 237 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 237 bp overlap
ChIP DE DE-GATA4-2 220 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 201 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 237 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 237 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 237 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 237 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 237 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 237 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 237 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 237 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 119 bp overlap
ChIP K562 ENCFF968WBH 236 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 183 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 237 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 237 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 237 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 237 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 237 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 237 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 151 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 190 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 227 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 214 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 237 bp overlap
ChIP K562 ENCFF512RED 193 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 215 bp overlap
NFE2 3 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 128 bp overlap
ChIP K562 ENCFF047YKA 237 bp overlap
ChIP K562 ENCFF163BSI 222 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 115 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 53 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 237 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 225 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 217 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 218 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 237 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 68 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 153 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 67 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 219 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 124 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 237 bp overlap
ChIP K562 ENCFF059YCJ 237 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 215 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 122 bp overlap
SPI1 9 datasets
ChIP EM-3 GSE128834.SPI1.EM-3 155 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 168 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 112 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 113 bp overlap
ChIP K562 ENCFF410ORC 140 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 155 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 117 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 162 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 107 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 227 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 209 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 134 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 222 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 237 bp overlap
ZEB1 2 datasets
ChIP HEK293 ENCFF007TAP 92 bp overlap
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 80 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 146 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 141 bp overlap
ZNF223 2 datasets
ChIP HEK293 ENCFF408UAU 190 bp overlap
ChIP HEK293 ENCSR906PCS.ZNF223.HEK293 169 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 105 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 104 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 237 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 179 bp overlap
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