chr3 : 13,157,648 – 13,158,706
1,058 bp 19 TFs 2 linked genes
This 1.1 kb open chromatin element is linked to IQSEC1 and NUP210 and is bound by 19 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
IQSEC1 125.1 kb Distal Multiome
NUP210 262.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:13,152,648 – 13,163,706
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 115 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF274GAT 92 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 298 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 337 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 215 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 1058 bp overlap
ChIP DE DE-FOXA2-2 1058 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 244 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 462 bp overlap
ChIP DE DE-GATA4-2 591 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 730 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 273 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 303 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 164 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 297 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 884 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 262 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 472 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 349 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 829 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 542 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 351 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 991 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 361 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 303 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 183 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 154 bp overlap