chr3 : 24,526,877 – 24,527,143

266 bp 66 TFs 2 linked genes

This 266 bp open chromatin element is linked to ENSG00000272554 and ENSG00000265028 and is bound by 66 transcription factors.

Linked Genes

2 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000272554		4.5 kb	Proximal	Proximity
ENSG00000265028		5.4 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

BARX1 1 dataset

Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap

BRD4 1 dataset

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 183 bp overlap

BSX 1 dataset

Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap

CRX 3 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 263 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 266 bp overlap

DLX1 1 dataset

Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap

EN2 1 dataset

Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap

EP300 2 datasets

ChIP SK-N-SH ENCFF829RWA 266 bp overlap

ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 168 bp overlap

GABPA 1 dataset

ChIP VCaP GSE49091.GABPA.VCaP 190 bp overlap

GATA2 2 datasets

ChIP SK-N-SH ENCFF764OZD 266 bp overlap

ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 221 bp overlap

GATA3 1 dataset

ChIP Kelly GSE94822.GATA3.Kelly 229 bp overlap

GBX1 1 dataset

Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap

HOXB13 1 dataset

ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 213 bp overlap

HOXC6 1 dataset

ChIP 22Rv1 GSE129951.HOXC6.22Rv1 99 bp overlap

KDM1A 2 datasets

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 143 bp overlap

ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 183 bp overlap

LBX1 1 dataset

Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap

MSX1 1 dataset

Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap

MZF1 1 dataset

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 206 bp overlap

Msx3 1 dataset

Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap

NEUROD1 1 dataset

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 224 bp overlap

NRL 1 dataset

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 238 bp overlap

NUP98-HOXA9 1 dataset

ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 106 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 266 bp overlap

Nobox 1 dataset

Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 227 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 221 bp overlap

PHOX2A 1 dataset

Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 266 bp overlap

PKNOX1 2 datasets

ChIP HEK293T ENCFF174WDB 256 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 212 bp overlap

POU2F1 1 dataset

ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 247 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 160 bp overlap

PRDM6 3 datasets

ChIP HEK293 ENCFF283AJL 229 bp overlap

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 266 bp overlap

ChIP HEK293 GSE76494.PRDM6.HEK293 205 bp overlap

PRRX2 1 dataset

Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap

RAX 1 dataset

Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap

RCOR1 2 datasets

ChIP SK-N-SH ENCFF518EXB 266 bp overlap

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 223 bp overlap

RNF2 1 dataset

ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 192 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 96 bp overlap

SP5_Zebrafish 1 dataset

ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 72 bp overlap

SP7 2 datasets

ChIP HEK293 ENCFF733RBE 266 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 266 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 129 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 266 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 266 bp overlap

ZBTB20 2 datasets

ChIP HEK293 ENCFF524ADK 266 bp overlap

ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 266 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 264 bp overlap

ZEB2 1 dataset

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 214 bp overlap

ZFP64 1 dataset

ChIP HEK293 GSE76494.ZFP64.HEK293 266 bp overlap

ZNF101 1 dataset

ChIP HEK293 ENCSR462FWS.ZNF101.HEK293 108 bp overlap

ZNF2 1 dataset

ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 222 bp overlap

ZNF331 2 datasets

Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap

ChIP HEK293 GSE76494.ZNF331.HEK293 183 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 266 bp overlap

ZNF366 2 datasets

ChIP HEK293 ENCFF799ATK 266 bp overlap

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 266 bp overlap

ZNF554 1 dataset

ChIP HEK293 GSE76494.ZNF554.HEK293 146 bp overlap

ZNF558 3 datasets

ChIP HEK293 ENCFF994JWH 76 bp overlap

ChIP HEK293 ENCSR447ZTA.ZNF558.HEK293 185 bp overlap

ChIP HEK293T GSE78099.ZNF558.HEK293T 224 bp overlap

ZNF574 1 dataset

ChIP HEK293 GSE76494.ZNF574.HEK293 184 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 253 bp overlap

ZSCAN16 1 dataset

ChIP HEK293 GSE76494.ZSCAN16.HEK293 122 bp overlap

ZSCAN21 1 dataset

ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 98 bp overlap