chr3 : 36,763,195 – 36,763,438

243 bp 39 TFs 2 linked genes

This 243 bp open chromatin element is linked to DCLK3 and HSPD1P6 and is bound by 39 transcription factors.

Linked Genes

2 genes

Gene	Expression	Dist. to TSS	Distance	Link type
DCLK3		1.1 kb	Proximal	Proximity
HSPD1P6		5.4 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

39 transcription factors

ADNP 1 dataset

ChIP K562 ENCFF492SKF 120 bp overlap

ARNTL 1 dataset

ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 195 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 120 bp overlap

CBX8 1 dataset

ChIP A-549 ENCSR616MOB.CBX8.A-549 180 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 209 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 7 datasets

ChIP A-673 ENCSR179SAO.EZH2.A-673 78 bp overlap

ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 133 bp overlap

ChIP LNCaP GSE39459.EZH2.LNCaP 236 bp overlap

ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 243 bp overlap

ChIP SF8628 GSE94834.EZH2.SF8628 59 bp overlap

ChIP SF8628 GSE94834.EZH2.SF8628 111 bp overlap

ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 243 bp overlap

FOS 1 dataset

ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 113 bp overlap

GATA6 2 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 132 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 243 bp overlap

HAND2 1 dataset

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 85 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JUN 8 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 233 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 243 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 243 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 198 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 230 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 243 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 243 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 243 bp overlap

KLF4 1 dataset

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 206 bp overlap

MTF2 1 dataset

ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 239 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 243 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 227 bp overlap

ChIP hESC GSE18292.NANOG.hESC 135 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NFKB1 1 dataset

ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 183 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 208 bp overlap

POU5F1 2 datasets

ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 130 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 171 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

RELA 5 datasets

ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 243 bp overlap

ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 214 bp overlap

ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 223 bp overlap

ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 177 bp overlap

ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 146 bp overlap

RNF2 1 dataset

ChIP A-549 ENCSR798EGJ.RNF2.A-549 128 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 243 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 243 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 164 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 139 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 233 bp overlap

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 103 bp overlap

SMAD3-HIF1A 1 dataset

ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 210 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 220 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 242 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 172 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 160 bp overlap

SPI1 2 datasets

ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 218 bp overlap

ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 176 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

SUZ12 1 dataset

ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 200 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF189 1 dataset

ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 240 bp overlap

ZNF398 1 dataset

ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 219 bp overlap