chr3 : 42,595,713 – 42,595,988
275 bp 30 TFs 2 linked genes
This 275 bp open chromatin element is linked to NKTR and SS18L2 and is bound by 30 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NKTR 4.7 kb Proximal Proximity
SS18L2 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:42,590,713 – 42,600,988
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 179 bp overlap
ChIP K562 ENCFF938UXQ 275 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 275 bp overlap
CBFA2T3 3 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 251 bp overlap
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 250 bp overlap
ChIP K562 ENCFF673OEZ 231 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 144 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 226 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 275 bp overlap
ChIP DE DE-FOXA2-2 275 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF885NMS 275 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 205 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 158 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 265 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 145 bp overlap
ChIP K562 ENCFF544PCK 222 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 275 bp overlap
ChIP DE DE-GATA4-2 275 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 275 bp overlap
ChIP DE DE-GATA6-2 275 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 275 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 275 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 275 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 275 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 275 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 205 bp overlap
ChIP K562 ENCFF744ALD 275 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 175 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 275 bp overlap
ChIP K562 ENCFF133OLU 275 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 275 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 269 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 202 bp overlap
ChIP K562 ENCFF788MPU 275 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 248 bp overlap
ChIP K562 ENCFF004YPK 275 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF215CWW 52 bp overlap
ChIP K562 ENCFF262YXJ 53 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 165 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF967GRF 166 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 275 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 275 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 275 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 275 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 275 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 242 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 12 datasets
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 249 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 195 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 176 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 138 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 186 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 151 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 158 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 174 bp overlap
ChIP K562 ENCFF620GMX 251 bp overlap
ChIP K562 ENCFF661CCK 229 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 168 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 211 bp overlap
ChIP K562 ENCFF931DJY 114 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 192 bp overlap
ChIP K562 ENCFF319QZT 272 bp overlap