chr3 : 46,586,733 – 46,587,577
844 bp 93 TFs 3 linked genes
This 844 bp open chromatin element is linked to ENSG00000283877, LRRC2, and CRIPTO and is bound by 93 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000283877 5.6 kb Proximal Proximity
LRRC2 6.6 kb Proximal Proximity
CRIPTO 8.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:46,581,733 – 46,592,577
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 445 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 378 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 432 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 465 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 177 bp overlap
BRD4 5 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 195 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 294 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 290 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 405 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 228 bp overlap
CEBPB 1 dataset
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 113 bp overlap
CREB1 3 datasets
ChIP WA01 ENCSR000BSN.CREB1.WA01 127 bp overlap
ChIP WTC11 ENCFF297VCI 371 bp overlap
ChIP WTC11 ENCFF297VCI 371 bp overlap
CREM 2 datasets
ChIP WTC11 ENCFF209ZUE 188 bp overlap
ChIP WTC11 ENCFF209ZUE 481 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 219 bp overlap
CTCF 1 dataset
ChIP GP5D GSE51234.CTCF.GP5D 242 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 335 bp overlap
E2F1 1 dataset
ChIP WTC11 ENCFF994SXO 417 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 592 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 456 bp overlap
ETS1 2 datasets
ChIP hESC ENCSR534VHI.ETS1.hESC 117 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 146 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 235 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FANCL 1 dataset
ChIP Jurkat GSE45864.FANCL.Jurkat 191 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 210 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 403 bp overlap
FOXJ3 2 datasets
ChIP WTC11 ENCFF909BTK 405 bp overlap
ChIP WTC11 ENCFF909BTK 405 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 242 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 2 datasets
ChIP WTC11 ENCFF338WGC 525 bp overlap
ChIP WTC11 ENCFF338WGC 525 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 436 bp overlap
GATA2 2 datasets
ChIP HepG2 ENCFF905PYM 298 bp overlap
ChIP SH-SY5Y ENCFF485YIB 316 bp overlap
GATA3 2 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 105 bp overlap
ChIP MCF-7 ENCFF437NQS 318 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 350 bp overlap
ChIP DE DE-GATA4-2 371 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 721 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 343 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 333 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 466 bp overlap
GLI4 1 dataset
ChIP HepG2 ENCFF099VAH 344 bp overlap
GTF2F1 1 dataset
ChIP WA01 ENCSR000EBP.GTF2F1.WA01 506 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HIVEP1 1 dataset
ChIP K562 ENCFF983WKN 232 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 302 bp overlap
IRF1 1 dataset
ChIP WTC11 ENCFF506LYD 377 bp overlap
IRF2 1 dataset
ChIP WTC11 ENCFF591FTP 425 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 276 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 249 bp overlap
JUN 2 datasets
ChIP WTC11 ENCFF172UDA 139 bp overlap
ChIP WTC11 ENCFF172UDA 361 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 183 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 166 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 246 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 290 bp overlap
KLF13 1 dataset
ChIP K-562 ENCSR608HVP.KLF13.K-562 98 bp overlap
MAX 4 datasets
ChIP WA01 ENCSR000EUP.MAX.WA01 182 bp overlap
ChIP WTC11 ENCFF223QFY 352 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
ChIP WTC11 ENCFF223QFY 391 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 137 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 225 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 353 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 332 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 251 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 285 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 232 bp overlap
NR1H2 1 dataset
ChIP WTC11 ENCFF386FJZ 405 bp overlap
OTX1 1 dataset
ChIP K562 ENCFF829SLD 240 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 592 bp overlap
ChIP H1 ENCFF566JSR 280 bp overlap
POU5F1 1 dataset
ChIP hESC ENCSR264RJX.POU5F1.hESC 183 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 551 bp overlap
RAD21 2 datasets
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 138 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 242 bp overlap
RELA 2 datasets
ChIP 786-O GSE86092.RELA.786-O 181 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
REST 1 dataset
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 210 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 157 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 157 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 77 bp overlap
SIRT6 1 dataset
ChIP WA01 ENCSR000AUS.SIRT6.WA01 123 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE36578.SMAD3.BG03 195 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 171 bp overlap
ChIP K562 ENCFF885DQE 235 bp overlap
SMYD3 1 dataset
ChIP HepG2 ENCFF612TNJ 187 bp overlap
SNRNP70 1 dataset
ChIP K-562 ENCSR754ZHU.SNRNP70.K-562 217 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 181 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 236 bp overlap
TRIM28 3 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 127 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 172 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 428 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 278 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 291 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 206 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 66 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 187 bp overlap
ZNF165 1 dataset
ChIP K562 ENCFF039BMN 337 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 324 bp overlap
ZNF217 1 dataset
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 227 bp overlap
ZNF219 1 dataset
ChIP WTC11 ENCFF998WKU 235 bp overlap
ZNF263 1 dataset
ChIP WTC11 ENCFF893RTM 348 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 189 bp overlap
ZNF317 2 datasets
ChIP WTC11 ENCFF537KXI 315 bp overlap
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 192 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 164 bp overlap
ZNF449 1 dataset
ChIP K562 ENCFF038VEZ 239 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 341 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 242 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 285 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 172 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 255 bp overlap
ZNF737 1 dataset
ChIP Hep-G2 ENCSR127IHN.ZNF737.Hep-G2 189 bp overlap
ZNF878 1 dataset
ChIP HepG2 ENCFF165VOD 54 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 174 bp overlap
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