chr3 : 46,888,263 – 46,888,534
271 bp 20 TFs 2 linked genes
This 271 bp open chromatin element is linked to PTH1R and MYL3 and is bound by 20 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PTH1R 4.9 kb Proximal Proximity
MYL3 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:46,883,263 – 46,893,534
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 247 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 105 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 153 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 168 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 58 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 200 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 271 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 271 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 83 bp overlap
KLF5 2 datasets
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 168 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 218 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 224 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 85 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 271 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 271 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 243 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 70 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 114 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 233 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 260 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 271 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 233 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 271 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 93 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE126634.RAD21.HAP1 121 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 191 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 250 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 153 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 92 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 143 bp overlap